Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,972,013 – 8,972,111 |
Length | 98 |
Max. P | 0.948776 |
Location | 8,972,013 – 8,972,111 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 69.23 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -6.60 |
Energy contribution | -6.64 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.27 |
Mean z-score | -1.74 |
Structure conservation index | 0.29 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8972013 98 + 23771897 --------------CUCAGUUGAGCAGCAAAGCUGCCCUAGGUUCGAUGCCGUGCUCAUGCAGCGCGGA-CUCAAACCACGGUUUUAGCUAGAAAAUUGCCAACAAAAAUGAU --------------....((((.((((...(((((((...((((.((..(((((((.....))))))).-.)).))))..)))...))))......))))))))......... ( -30.20) >DroSec_CAF1 11124 98 + 1 --------------ACAAAACAAACAAUAAAGCUACCCUGGGUUCGAGACCCUGCUAACGCAGCAAGGA-CUUAACCCAGUGUUUUAGCUAGAAAAUUGCCAACAAAAAUGAU --------------................((((((.(((((((.(((.((((((....))))...)).-)))))))))).))...))))....................... ( -24.80) >DroSim_CAF1 11775 98 + 1 --------------AUAAAACAAACAACAAAGCUACCCUGGGUUCUAGACCCUGCUAACGCAGCACGGA-CUCAACCCACUUUUUUAGCUAGAAAAUUGUCAACAAAAAUGAU --------------................(((((...((((((..((.((((((....))))...)).-)).))))))......)))))....................... ( -19.00) >DroEre_CAF1 11479 98 + 1 --------------UCUGGCUGUGCAUCAAAGCAGCCCUGGGUUCGAAACCGAGCUGAUACAGCGAAGA-CACAAACCACCACUCUAGCUAGAAAAUAGCUAACCGAAAUGAU --------------...((((((........)))))).(((..(((....)))((((...)))).....-......)))......((((((.....))))))........... ( -23.20) >DroYak_CAF1 12003 105 + 1 AUGUUAAUGAAAUGUUUAGGUAU--------GUAGCCCUGGGUUCGAAACCGUGCUAAAGCAGCGUAGACCACAAACCAUUGUUCUAGCUAGAAAAUAGCCAACUAAAAUGAU ..(((.(((...(((((.(((((--------(.((((...))))......)))))).))))).))).))).......((((......((((.....)))).......)))).. ( -17.22) >consensus ______________AUAAGAUAAACAACAAAGCUGCCCUGGGUUCGAAACCGUGCUAACGCAGCGAGGA_CUCAAACCACUGUUUUAGCUAGAAAAUUGCCAACAAAAAUGAU ..............................(((((.....(((.....)))..(((.....))).....................)))))....................... ( -6.60 = -6.64 + 0.04)
Location | 8,972,013 – 8,972,111 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 69.23 |
Mean single sequence MFE | -29.36 |
Consensus MFE | -9.30 |
Energy contribution | -9.70 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.20 |
Mean z-score | -2.18 |
Structure conservation index | 0.32 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8972013 98 - 23771897 AUCAUUUUUGUUGGCAAUUUUCUAGCUAAAACCGUGGUUUGAG-UCCGCGCUGCAUGAGCACGGCAUCGAACCUAGGGCAGCUUUGCUGCUCAACUGAG-------------- .(((......(((((.........)))))......(((((((.-.(((.(((.....))).)))..)))))))..(((((((...)))))))...))).-------------- ( -31.80) >DroSec_CAF1 11124 98 - 1 AUCAUUUUUGUUGGCAAUUUUCUAGCUAAAACACUGGGUUAAG-UCCUUGCUGCGUUAGCAGGGUCUCGAACCCAGGGUAGCUUUAUUGUUUGUUUUGU-------------- ............((((((.....(((((...(.(((((((.((-.((((((((...)))))))).))..)))))))).)))))..))))))........-------------- ( -32.40) >DroSim_CAF1 11775 98 - 1 AUCAUUUUUGUUGACAAUUUUCUAGCUAAAAAAGUGGGUUGAG-UCCGUGCUGCGUUAGCAGGGUCUAGAACCCAGGGUAGCUUUGUUGUUUGUUUUAU-------------- ............((((((.....(((((......((((((.((-.((.(((((...))))).)).))..))))))...)))))..))))))........-------------- ( -27.70) >DroEre_CAF1 11479 98 - 1 AUCAUUUCGGUUAGCUAUUUUCUAGCUAGAGUGGUGGUUUGUG-UCUUCGCUGUAUCAGCUCGGUUUCGAACCCAGGGCUGCUUUGAUGCACAGCCAGA-------------- (((((((..(((((.......)))))..)))))))((((.(((-(..(((..(...(((((((((.....)))..)))))))..))).))))))))...-------------- ( -29.40) >DroYak_CAF1 12003 105 - 1 AUCAUUUUAGUUGGCUAUUUUCUAGCUAGAACAAUGGUUUGUGGUCUACGCUGCUUUAGCACGGUUUCGAACCCAGGGCUAC--------AUACCUAAACAUUUCAUUAACAU ....((((((((((.......))))))))))....(((.((((((((..((((...))))..(((.....)))..)))))))--------).))).................. ( -25.50) >consensus AUCAUUUUUGUUGGCAAUUUUCUAGCUAAAACAGUGGUUUGAG_UCCGCGCUGCAUUAGCACGGUCUCGAACCCAGGGCAGCUUUGUUGCUUAUCUAAA______________ ....((((.(((((.......))))).))))....((((((....((..(((.....)))..))...))))))........................................ ( -9.30 = -9.70 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:25 2006