Locus 3095

Sequence ID 3L_DroMel_CAF1
Location 8,966,851 – 8,966,964
Length 113
Max. P 0.634905
window4825

overview

Window 5

Location 8,966,851 – 8,966,964
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.10
Mean single sequence MFE -38.40
Consensus MFE -29.13
Energy contribution -27.00
Covariance contribution -2.13
Combinations/Pair 1.39
Mean z-score -1.33
Structure conservation index 0.76
SVM decision value 0.21
SVM RNA-class probability 0.634905
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8966851 113 + 23771897
----CCUGCUGCGAAUGAUGGGGCAGC---GGGUGUGGCAGGCAAUUUAGCGAAAAGUUUAGCAUGUCGUUGGAGUUUUUGCGGUUGUUAAUCCUAUCGUUGCUGCCAUUUUUAGUAUCG
----((((((((..........)))))---))).(((((((.((((...(((((((.((((((.....)))))).)))))))((........))....)))))))))))........... ( -40.60)
>DroPse_CAF1 20923 117 + 1
UGCUGCUGCUGCUGGUGAUGCGGCAGG---GGAUGCUGCAGGCAGUUCAGGGAGAAAUUCAACAUGUCAUUAGAGUUCUUCCGAUUGUUAAUCCUAUCACUGCUGCCAUUCUUGGGAUCA
.....(((((((.......)))))))(---(((((..((((.((((...(((((((.(((............))))))))))(((.(......).)))))))))))))))))........ ( -35.10)
>DroSec_CAF1 5960 113 + 1
----CCUGCUGCGAAUGAUGGGGCAGU---GGGUGCGGCAAGCAAUUUAGCGAAAAAUUUAGCAUGUCGUUGGAGUUUUUGCGGUUGUUAAUCCUAUCGUUGCUGCCACUUUUAGAAUCG
----((..((((..........)))).---.))...((((.(((((...(((((((.((((((.....)))))).)))))))((........))....)))))))))............. ( -34.70)
>DroYak_CAF1 6058 113 + 1
----GCUGCUGCGAAUGAUGGGGCAGC---GGGUGUGGCAGGCAAUUUAGCGAGAAGUUCAGCAUGUCGUUGGAGUUUUUGCGGUUGUUAAUUCUAUCGUUGCUGCCAUUUUUGGUAUCG
----((((((.((.....)).))))))---....(((((((.((((...(((((((.((((((.....)))))).)))))))(((.(......).))))))))))))))........... ( -39.90)
>DroAna_CAF1 5573 116 + 1
----CCUGCUGCGGAUGGUGCGGCAGCUGUGGAUGCUGCAGGCAGUUGAGCGAGAAGUUCAGCAUGUCGUUGGAGUUCUUCCGGUUGUUGAUCCGGUCGUUGCUGCCGUUCUUCGUGUCG
----((......))..((..(((((((.......))))).((((((..((((((((.((((((.....)))))).)))..((((........)))))))))))))))......))..)). ( -45.00)
>DroPer_CAF1 6212 117 + 1
UGCUGCUGCUGCUGGUGAUGCGGCAGG---GGAUGCUGCAGGCAGUUCAGGGAGAAAUUCAACAUGUCAUUAGAGUUCUUCCGAUUGUUAAUCCUAUCACUGCUGCCAUUCUUGGGAUCA
.....(((((((.......)))))))(---(((((..((((.((((...(((((((.(((............))))))))))(((.(......).)))))))))))))))))........ ( -35.10)
>consensus
____CCUGCUGCGAAUGAUGCGGCAGC___GGAUGCGGCAGGCAAUUUAGCGAGAAAUUCAGCAUGUCGUUGGAGUUCUUCCGGUUGUUAAUCCUAUCGUUGCUGCCAUUCUUGGUAUCG
.....(((((.(.......).)))))....(((((..(((.(((((...(((((((.((((((.....)))))).)))))))(((.(......).))))))))))))))))......... (-29.13 = -27.00 +  -2.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:23 2006