Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 904,498 – 904,602 |
Length | 104 |
Max. P | 0.998316 |
Location | 904,498 – 904,602 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 75.23 |
Mean single sequence MFE | -32.44 |
Consensus MFE | -11.17 |
Energy contribution | -14.69 |
Covariance contribution | 3.52 |
Combinations/Pair | 1.08 |
Mean z-score | -2.80 |
Structure conservation index | 0.34 |
SVM decision value | 3.06 |
SVM RNA-class probability | 0.998316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 904498 104 + 23771897 ACCAUUAUGCAACACAUACUCACACACACA----------CACUCGCUGUCUCGUUUAUCUGUCCUGUUUGUGUGUGUGUGUGUGUUUGUGAGUUGGUGCGGUUCUUUUGGCAU .(((....((..(((..(((((((.(((((----------(((.(((...(.((..((.......))..)).).))).)))))))).)))))))..)))..)).....)))... ( -34.80) >DroSec_CAF1 47046 94 + 1 GCCAUUAUCCAACACAUACUCACAUACUCG--------------CGCUGCCUCGUUUAUCUGUCCUCG----GUGUGU--GUGUGUUUGUGAGUUGGUGCGGUUCUUUUGGCAU ((((....((..(((..(((((((.((.((--------------(((((((................)----))).))--))).)).)))))))..))).))......)))).. ( -31.09) >DroSim_CAF1 43586 96 + 1 GCCAUUAUGCAACACAUACUCACACACACA--------------CGCUGCCUCGUUUAUCUGUCCUCG----GUGUGUGUGUGUGUUUGUGAGUUGGUGCGGUUCUUUUGGCAU ((((....((..(((..(((((((((((((--------------(((((((................)----))).))))))))))..))))))..)))..)).....)))).. ( -37.99) >DroEre_CAF1 50225 96 + 1 UCCAUUAUGCAACACAUACCCACACAUGCACACUUGCACACAUGCGCCGCCUCGUUUAUCUGUGCCGUGU------------------CUGUGUUGGUGCGGUUCCUUUGGCAU .(((....(.(((.(.((((.(((((.((((....(((((.(((.((......)).))).))))).))))------------------.))))).)))).)))).)..)))... ( -26.30) >DroYak_CAF1 49118 108 + 1 GCCAUUAUGCAACACAUACCCACACACCCAC------ACACAUGCGCUGCCUCGUUUAUCUGUCCCGUGUCUGUUGGUGUGUCUGUGUCUGUGUUGGUGCGGUUCUUUUGGCAU ((((...((((((((((((..(((((((.((------(.(((((.((..............))..))))).))).)))))))..)))..)))))...)))).......)))).. ( -32.04) >consensus GCCAUUAUGCAACACAUACUCACACACACA__________CA__CGCUGCCUCGUUUAUCUGUCCUGU_U__GUGUGUGUGUGUGUUUGUGAGUUGGUGCGGUUCUUUUGGCAU .........((((.(((((.((((((((((...........................................)))))))))).))..))).))))((((.(......).)))) (-11.17 = -14.69 + 3.52)
Location | 904,498 – 904,602 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 75.23 |
Mean single sequence MFE | -27.81 |
Consensus MFE | -8.28 |
Energy contribution | -9.76 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.87 |
Structure conservation index | 0.30 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 904498 104 - 23771897 AUGCCAAAAGAACCGCACCAACUCACAAACACACACACACACACAAACAGGACAGAUAAACGAGACAGCGAGUG----------UGUGUGUGUGAGUAUGUGUUGCAUAAUGGU ...........((((........((((.((.(((((((((((((...(......).....((......)).)))----------)))))))))).)).))))........)))) ( -30.89) >DroSec_CAF1 47046 94 - 1 AUGCCAAAAGAACCGCACCAACUCACAAACACAC--ACACAC----CGAGGACAGAUAAACGAGGCAGCG--------------CGAGUAUGUGAGUAUGUGUUGGAUAAUGGC ..((((......((((((..(((((((.......--.....(----(..(..........)..))..((.--------------...)).)))))))..))).)))....)))) ( -21.60) >DroSim_CAF1 43586 96 - 1 AUGCCAAAAGAACCGCACCAACUCACAAACACACACACACAC----CGAGGACAGAUAAACGAGGCAGCG--------------UGUGUGUGUGAGUAUGUGUUGCAUAAUGGC ..((((........((((..((((((..((((((((.(...(----(..(..........)..))..).)--------------)))))))))))))..)))).......)))) ( -28.86) >DroEre_CAF1 50225 96 - 1 AUGCCAAAGGAACCGCACCAACACAG------------------ACACGGCACAGAUAAACGAGGCGGCGCAUGUGUGCAAGUGUGCAUGUGUGGGUAUGUGUUGCAUAAUGGA ...(((..(.(((((.(((.(((((.------------------((((.(((((.((...((......)).)).)))))..))))...))))).))).)).))).)....))). ( -27.30) >DroYak_CAF1 49118 108 - 1 AUGCCAAAAGAACCGCACCAACACAGACACAGACACACCAACAGACACGGGACAGAUAAACGAGGCAGCGCAUGUGU------GUGGGUGUGUGGGUAUGUGUUGCAUAAUGGC ..((((...(.....)..(((((((...((..(((((((.(((.(((((...........))..((...)).))).)------)).)))))))..)).))))))).....)))) ( -30.40) >consensus AUGCCAAAAGAACCGCACCAACUCACAAACACACACACACAC__A_ACAGGACAGAUAAACGAGGCAGCG__UG__________UGUGUGUGUGAGUAUGUGUUGCAUAAUGGC ..((((......(.((((..(((((((.((.........................................................)).)))))))..)))).).....)))) ( -8.28 = -9.76 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:54 2006