Locus 3089

Sequence ID 3L_DroMel_CAF1
Location 8,949,563 – 8,949,668
Length 105
Max. P 0.851596
window4814

overview

Window 4

Location 8,949,563 – 8,949,668
Length 105
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 79.15
Mean single sequence MFE -25.25
Consensus MFE -17.09
Energy contribution -16.73
Covariance contribution -0.36
Combinations/Pair 1.29
Mean z-score -1.74
Structure conservation index 0.68
SVM decision value 0.79
SVM RNA-class probability 0.851596
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8949563 105 - 23771897
----AAAUGAAGCUCAAUAAACAUUAAUCAUAACAGUGA-GUUACAGCUUACAUUACACAACUCCUGGAGCUGGAGGGCAUAGAAACAGGCCCUGCGCAGCUUGUUGACC
----.........(((((...............(((.((-(((................))))))))((((((((((((..........))))).).))))))))))).. ( -25.79)
>DroSec_CAF1 6881 97 - 1
----AAAUUAA--------UAUAUUAAUCAUAACAGUGA-GUUACAGCUUACAUUGCACAACUCCUGGAGCUGGAGGGCAUAAAAGCAGGCCCUGCGCAGCUUGUUGACC
----...((((--------(.............(((.((-(((...((.......))..))))))))((((((((((((..........))))).).))))))))))).. ( -27.00)
>DroSim_CAF1 6936 97 - 1
----AAAUUAA--------UAUAUUAAUCAUAACAGUGA-GUUAGAGCUUACAUUGCACAACUCCUGGAGCUGGAAGGCAUAAAAGCAGGCCUUGCGCAGCUUGUUGACC
----...((((--------(.............(((.((-(((.(.((.......)).)))))))))((((((((((((..........))))).).))))))))))).. ( -25.50)
>DroEre_CAF1 7444 105 - 1
----CAAUUAAGAUCAAUAUAUAUAAAUCAUAACAGUGG-GUUACAGCUUACAUUACACAACUCCUGGAGUUGGAGGGCAUAAAAACAGGCCCUGCGCAGCUUGUUGACC
----.............................(((..(-(((...((..........((((((...)))))).(((((..........)))))))..))))..)))... ( -23.50)
>DroYak_CAF1 6927 106 - 1
----GAAUUAAGAUCAAUAUAUAUAAAAUAUAACAGUGAAGCUGGAGCUUACAUUACACAACUCCUGGAGUUGAAGGGCAUAGAAGCAGGCCCUGCGCAGCUUGUUGACC
----.........(((((.(((((...)))))......((((((..((..........((((((...)))))).(((((..........))))))).))))))))))).. ( -25.60)
>DroAna_CAF1 6685 104 - 1
ACAACAAUUAUACUAAAGUUU-----UUCAAAAAUUCAA-GCUGAACCUUACAUUGCACAGCUCCUGCAGCUGCAGGGCAUAGAAACAGGCCCUCCUCAGCUUGUUGAUC
.....................-----.((((.....(((-(((((.............(((((.....))))).(((((..........)))))..)))))))))))).. ( -24.10)
>consensus
____AAAUUAAG_UCAAUAUAUAUUAAUCAUAACAGUGA_GUUACAGCUUACAUUACACAACUCCUGGAGCUGGAGGGCAUAAAAACAGGCCCUGCGCAGCUUGUUGACC
...................................((((.((....))))))......((((.....((((((.(((((..........)))))...))))))))))... (-17.09 = -16.73 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:12 2006