Locus 3086

Sequence ID 3L_DroMel_CAF1
Location 8,940,392 – 8,940,482
Length 90
Max. P 0.601393
window4809

overview

Window 9

Location 8,940,392 – 8,940,482
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 76.28
Mean single sequence MFE -23.50
Consensus MFE -11.59
Energy contribution -14.28
Covariance contribution 2.70
Combinations/Pair 1.17
Mean z-score -1.83
Structure conservation index 0.49
SVM decision value 0.14
SVM RNA-class probability 0.601393
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8940392 90 - 23771897
AUGUUACAUGGUUGUGGCUGAAAACCAGCAGAGUGUGCAAAAAGUUGUACUCCAA----CCGCAGUGGAAGCCAUUGAAAUGCAGCAUCCAUCA
(((((.((((((((..((((.....))))...(.((((((....)))))).))))----)).((((((...))))))..))).)))))...... ( -25.40)
>DroSec_CAF1 33766 94 - 1
AUGUUACAUUUUUGUGGCUCAAAAUCUGUAGAGUGUGCAAAAAGUUGUGCUCAAACAAGCCAUUGUGGAAGCCAUUGAAAUGCAGCAUCCAUCA
(((((.((((((.(((((((..........((((..((((....))))))))..((((....)))).).)))))).)))))).)))))...... ( -23.90)
>DroSim_CAF1 34168 90 - 1
AUGUUACAUUUUUGAGGCUCAAAACCUGAAAAGUGUGCAAAAAGUUGUGCUCAAA----CCGCAGUGGAAGCCAUUGAAAUGCAGCAUCCAUCA
.(((.((((((((.(((.......))).))))))))))).......(((((((..----...((((((...))))))...)).)))))...... ( -22.80)
>DroEre_CAF1 34171 86 - 1
AUGUUACAUUUUUGUGGGUCCCAACAUGCAAAGUGUGCAACAAGUUGAGCUCCAA----CCGCAGAGGAAGCCAUUUAAAUGCAGC----AACA
.((((.(((((..((((.(((((((.((((.....))))....)))).((.....----..))...)))..))))..))))).)))----)... ( -21.60)
>DroYak_CAF1 33969 90 - 1
AUGUUACAUUUUUGUGGCUCAAAACCUGUAAAGCGUGCAAAAAGUUGCGCUCCAA----CCGCAGAGGAAGCCAUUGAAAUGCAGCAUCCAACA
(((((.((((((.((((((.....(((((...(.((((((....)))))).)...----..)))).)..)))))).)))))).)))))...... ( -25.60)
>DroAna_CAF1 33111 78 - 1
AUUCAACAUUUUUG---GUCACAAACCAGAACGUGUGCAU---------CUGAAA----CCGCAGUGGAAGCCAUGGAAGUGCGGUCUCUGCGA
.....(((((((((---((.....))))))).))))(((.---------..((.(----(((((((((...)))).....)))))).))))).. ( -21.70)
>consensus
AUGUUACAUUUUUGUGGCUCAAAACCUGCAAAGUGUGCAAAAAGUUGUGCUCAAA____CCGCAGUGGAAGCCAUUGAAAUGCAGCAUCCAUCA
(((((.(((((..((((((...............((((((....)))))).........((.....)).))))))..))))).)))))...... (-11.59 = -14.28 +   2.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:08 2006