| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,939,923 – 8,940,043 |
| Length | 120 |
| Max. P | 0.773750 |
| Location | 8,939,923 – 8,940,043 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -41.64 |
| Consensus MFE | -22.20 |
| Energy contribution | -23.87 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8939923 120 + 23771897 AAGGAUCCCACAACCGGGUGAGGUCCACUCGGCAUGCUCUUCACAGCAAUGUCGUGAAUCCUGCAGGCCAACUCAUGUGGAACCACCUCCUUGUUGGAUCUCACCCUCUUUAUGGGACUG ..((.(((((.((..((((((((((((...(((.(((..(((((.((...)).)))))....))).))).......(((....)))........))))))))))))...)).))))))). ( -45.80) >DroSec_CAF1 33290 120 + 1 AAGGAUCCCACAACCGGAUGAGGUCCACUCGGCAUGCUCUUUACAGCAAUGUCGUGAAUGGCGCAGGCCAAAUCAUGUGGAACCACCUCCUUGUUGGAUCUCACCCUCUUGAUGGGACCG ..((.((((((((..((.((((((((((.(((((((((......))).)))))).)..((((....))))......(((....)))........))))))))).))..))).))))))). ( -46.80) >DroSim_CAF1 33692 120 + 1 AAGGAUCCCACAACCGGAUGAGGUCCACUCGGCAUGCUCUUUACAGCAAUGUCGUGAAUGGCGCAGGCCAACUCAUGUGGAACCACCUCCUUGUUGGAUCUCACCCUCUUGAUGGGACUG ..((.((((((((..((.((((((((((.(((((((((......))).)))))).)..((((....))))......(((....)))........))))))))).))..))).))))))). ( -44.20) >DroEre_CAF1 33694 120 + 1 AAGGAGCCGAGAACCGGAUGAGGUCCACUCGGCAUGCUCCUCACUGCAAUGUCGUGAAUGGUGGAGGCCAAUUCAUGCGGAAGCACCUCCUUGUUGGAUCUCACCCUCUUGAUGGUACAG .......(((((...((.((((((((.(.((((((((........)).)))))).)((..(.(((((........(((....)))))))))..)))))))))).)))))))......... ( -42.30) >DroYak_CAF1 33493 120 + 1 AAGGAACCGACAACCGGAUGUGGUCCACUGGGCAUGCUUUUCACGGCAAUGUCGUGAAUUUUGGUGGCCAGUUCAUGCGGGAUCACCUCCUUGUUGGAUCUCACCCGCUUGAUGGGACUG ..(((.(((((((..(((.((((((((((((.(((....((((((((...)))))))).....))).))))).......))))))).)))))))))).)))..((((.....)))).... ( -47.71) >DroAna_CAF1 32633 120 + 1 AUACAUCCUACAACAGGUGUCGUAUCAUUUGGCAUGCUACCAAAGGCCAUCUCGUGAAAUUUGUGUCCAAGCUCUGAAGGAACUACUUCCUUGUUGGAUCGUACCAUAGCCACAUCGUUA .(((((((.((..(((((((((.......))))))(((((((((...(((...)))...)))).))...))).)))((((((....)))))))).)))).)))................. ( -23.00) >consensus AAGGAUCCCACAACCGGAUGAGGUCCACUCGGCAUGCUCUUCACAGCAAUGUCGUGAAUGGUGCAGGCCAACUCAUGUGGAACCACCUCCUUGUUGGAUCUCACCCUCUUGAUGGGACUG .....(((((.....((.((((((((((.(((((((((......))).)))))).)......................(((......)))....))))))))).))......)))))... (-22.20 = -23.87 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:07 2006