| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,939,563 – 8,939,683 |
| Length | 120 |
| Max. P | 0.542643 |
| Location | 8,939,563 – 8,939,683 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.28 |
| Mean single sequence MFE | -36.40 |
| Consensus MFE | -19.89 |
| Energy contribution | -22.57 |
| Covariance contribution | 2.68 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8939563 120 + 23771897 CCAUCCUGGCAGCGCAGGAUUACCUUACGGGGGCACGCCAACUCAAUCUUGAUGACCUUCAUAUCAAGUUGAAUACGUCCUUCCAGUAGACCCAGCUCUUCUGGCGUAUCCGCGCUGACC .......((((((((.((((....(((((((((.(((.....((((.(((((((.......)))))))))))...))).))))).))))((((((.....)))).)))))))))))).)) ( -38.90) >DroSec_CAF1 32930 120 + 1 CCAUCCUGGCAGCGCAGGAUUACCUUACGGGGGCACGCCAACUCGAUCUUGAUGACCUUCUUAUUCAGUUGAAUGCGUCCUUCCAGUAGACCUAGCUCCUCUGGCGUAUCCUCGCUGACC .......(((((((.(((((.((.(((((((((.(((((((((.((....((......))....)))))))...)))).))))).)))).....(((.....))))))))))))))).)) ( -37.10) >DroSim_CAF1 33332 120 + 1 CCAUCCUGGCAGCGCAGGAUUACCUUACGGGGGCACGCCAACUCGAUCUUGAUGACCUUCUUAUUAAGUUGAAUGCGUCCUUCCAGUAGACCUAGCUCCUCUGGCGUAUCCUCGCUGACC .......(((((((.(((((.((.(((((((((.((((....((((.((((((((.....))))))))))))..)))).))))).)))).....(((.....))))))))))))))).)) ( -38.90) >DroEre_CAF1 33334 120 + 1 CCAUCCUGGCAUCGCAGGAUCACCUUGCGGGGGCACGCCAACUCGAUCUUGGUGACCUUCUUAGCAAGUUGAAUGCGGCCUUCCAGCAAGCCUAGCUCCUCUGGAGUAUCCUCGCUGACC .......((((.((.(((((...(((((((((((.(((....((((.((((.(((.....))).))))))))..)))))).))).)))))....(((((...)))))))))))).)).)) ( -39.80) >DroYak_CAF1 33133 120 + 1 CCAUCCUCACAGCGCAGGAUUACCUUACGCGGGCACGCCAACUCGAUCUUGGUCACCUUCUUGGCCAGUUGAACGCGUCCCUCCAGUAAACCCAGCUCCUCUGGCGAAUCCUCGCUGACA .........(((((.((((((...((((..(((.((((....(((((..((((((......)))))))))))..)))))))....)))).(((((.....)))).))))))))))))... ( -40.90) >DroAna_CAF1 32274 119 + 1 -CAUCCUCGCAUUUAACCUGAACUUUACGGCCUGGAAGUAGUUGGAUUUGAGUCACUUUCUUUCCCAGUUUCACACAUCCAUUGAGCAAUCCCAGCUGGCUGGGCUCAUCUUCGCUAACU -..(((..((...(((........)))..))..)))..(((((((((.((.(..(((.........)))..).)).))))).(((((....((((....))))))))).....))))... ( -22.80) >consensus CCAUCCUGGCAGCGCAGGAUUACCUUACGGGGGCACGCCAACUCGAUCUUGAUGACCUUCUUAUCAAGUUGAAUGCGUCCUUCCAGUAAACCCAGCUCCUCUGGCGUAUCCUCGCUGACC .........(((((.(((((....(((((((((.((((....((((.((((((((.....))))))))))))..)))).))))).))))..((((.....))))...))))))))))... (-19.89 = -22.57 + 2.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:06 2006