| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,936,905 – 8,937,019 |
| Length | 114 |
| Max. P | 0.602172 |
| Location | 8,936,905 – 8,937,019 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.43 |
| Mean single sequence MFE | -35.35 |
| Consensus MFE | -21.06 |
| Energy contribution | -22.28 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8936905 114 + 23771897 AGAAAGGCAGCAGCGAUGAUGAAAACCAAGUGUCCAGUACAUCCGGAUCACGUUUCAAUGUAAAUUCUUCGCUACCAAUAAGUCUCAUGGCUUUCUGCCUAGCUGUCUUCUCGU .(((((((((((((((.(((((((.....((((((.(.....).))).))).)))))........)).)))))..((..(((((....)))))..))....)))))))).)).. ( -31.80) >DroVir_CAF1 29148 114 + 1 AGAAGGGCAACAGCGAAGAGGAGAACCAGGUGUCCAGUACAUCUGGGUCACGGGUCAGUCUUAGCUCCUUGCUGCCCAAUUUGAGCUCCGCCUUUUCGCGGGCAGUUUCUUCAU .((((((((...((((.((((((((((..((((((((.....))))).))).)))...))))..))).))))))))).......((.((((......))))))......))).. ( -41.10) >DroSec_CAF1 30232 114 + 1 AGAAGGGCAGCAGCGACGAUGAAAACCAAGUAUCCAGUACAUCCGGAUCGCGUUUCAAUGUAAAUUCUUCGCUACCAAUCAGUUUCAUGGCUUUCUGCCUGGCUGCCUUCUCGU .(((((((((((((((.(((((((.....((((((.(.....).)))).)).)))))........)).)))))............((.(((.....))))))))))))).)).. ( -32.60) >DroEre_CAF1 30640 114 + 1 AGAAGGGCAGCAGCGACGAAGAAAACCAAGUGUCCAGAACAUCCGGGUCGCGCUUUAAAGUAAAUUCCUCGCUACCAAUAAGUUGUUUGGCUUUCUGCCUGGCUGCCGUCUCGU (((..(((((((((((.(((.........(((.((.(......).)).)))(((....)))...))).)))))...............(((.....)))..)))))).)))... ( -32.50) >DroYak_CAF1 30420 114 + 1 AGAAGGGCAGCAGCGACGAAGAAAACCAAGUGUCCAGAACAUCCGGGUCGCGUUUUAACGUAAAUUCCUCGCUGCCCACGAGUUGUUUGGCUUUCUGCCUGGCUGCCUUCUCGC .(((((((((((((((.(((((...((..((((.....))))..)).))((((....))))...))).))))))).........((..(((.....)))..)))))))).)).. ( -37.40) >DroAna_CAF1 29541 114 + 1 AAAAAGGCAACAGCGAGGAUGAAAACCAAGUGUCCAGCACAUCAGGAUCACGGGUUAGCACAAAGUCCUCGCUGCCCAUCAACUUAACCGCCUUCUCGCGUGCCGCCUUUUCGU .(((((((..(((((((((((..((((..((((((.........))).))).))))..)).....)))))))))..............(((......)))....)))))))... ( -36.70) >consensus AGAAGGGCAGCAGCGACGAUGAAAACCAAGUGUCCAGUACAUCCGGAUCACGUUUCAAUGUAAAUUCCUCGCUACCAAUAAGUUGCAUGGCUUUCUGCCUGGCUGCCUUCUCGU .(((((((((((((((.(((.........((((((.(.....).))).))).............))).)))))...............(((.....)))..)))))))).)).. (-21.06 = -22.28 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:05 2006