Locus 3081

Sequence ID 3L_DroMel_CAF1
Location 8,935,138 – 8,935,238
Length 100
Max. P 0.603926
window4804

overview

Window 4

Location 8,935,138 – 8,935,238
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 65.93
Mean single sequence MFE -16.82
Consensus MFE -9.26
Energy contribution -9.14
Covariance contribution -0.12
Combinations/Pair 1.18
Mean z-score -1.44
Structure conservation index 0.55
SVM decision value 0.14
SVM RNA-class probability 0.603926
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8935138 100 + 23771897
AAACGGAAAUGUCUAAAUUUUCCGAACAGAAAUUGAUAUUUGAAUUAGAUCAGUGACAAGUAGUUGAGUAUUUUUAUGCUUAGUGCCUUUAUAAGGUACG
...((((((.........))))))....(..((((((...........))))))..).......(((((((....)))))))((((((.....)))))). ( -21.00)
>DroSec_CAF1 28490 82 + 1
AAACGGAAAAGUCUAAAUUUUCC-AACAGAAAUUGAUAUUUG-----------------AUAGAUAAAUAUCUUUAUGCUUAGUACCUUUAUAAGGUAUG
....((((((.......))))))-..........((((((((-----------------.....))))))))..........((((((.....)))))). ( -15.20)
>DroSim_CAF1 28869 99 + 1
AAACGGAAAUGUCUAAAUUUUCC-AACAGAAAUUGAUAUUUGAAUUAGACCACUGACAAAUAGAUUAAUAUCUUUAUGCUUAGUACCUUUAUAAGGUACG
....(((((.........)))))-...(((.(((((((((((..((((....))))))))))..))))).))).........((((((.....)))))). ( -18.00)
>DroEre_CAF1 28881 79 + 1
AAAAGGAAAUGUCGAAAUUUUCCUAACAGAUGUUCAUAUUUGGAUUAGACUACAGGUA-CU--------------------AGUACCUUUUAAAGGUACU
...((((((.........))))))..((((((....))))))...(((((.....)).-))--------------------)((((((.....)))))). ( -15.50)
>DroYak_CAF1 28678 81 + 1
-----GAAAUGCCAAAAUUUUCCUAAAAGAAGU-------------CGACUACAGGCA-AUAGUUUAAUAUCUUAAGGCUUAGUACCUUUUCAAGGUACU
-----.....(((......(((......)))((-------------(.......))).-.................)))..(((((((.....))))))) ( -14.40)
>consensus
AAACGGAAAUGUCUAAAUUUUCC_AACAGAAAUUGAUAUUUG_AUUAGACCACAGACA_AUAGAUUAAUAUCUUUAUGCUUAGUACCUUUAUAAGGUACG
....(((((.........)))))...........................................................((((((.....)))))). ( -9.26 =  -9.14 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:02 2006