Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,927,364 – 8,927,477 |
Length | 113 |
Max. P | 0.763945 |
Location | 8,927,364 – 8,927,477 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.64 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -19.41 |
Energy contribution | -20.30 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.05 |
Mean z-score | -2.16 |
Structure conservation index | 0.74 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8927364 113 - 23771897 UUA-------AACUGAAAAUAGAGAAAUCUCAAUAAAAAAACGAGUUAAUUUAAUAUAAGGGGCGGUGCCACGACCAGAAUUUUUGGUACUAUAAAAGAUAUGGGCUAGUGUCACCCAAU ...-------...........(((....)))............................(((..(((((((.((.......)).)))))))......(((((......))))).)))... ( -19.70) >DroSec_CAF1 20322 118 - 1 GCGAAAAAGCAUAUUAAAUUAAAGAAAUCCCUAUACAAAAACUAGUUAAUUUAAUAUAAUGGGCGGUGCCACGCCCAGAAUUUUUGGUAUUAUAAAAGAUAUGGGCUGGUGUCACCUA-- ((......))((((((((((((..(.................)..))))))))))))..((((.((..(((.(((((...((((((......))))))...))))))))..)).))))-- ( -31.93) >DroSim_CAF1 20681 118 - 1 GCGAAAAAGCAUACGAAAUUAAAGAAAUCCCUAUACAAAAACUAGUUAAUUUAAUAUAAGGGGCGGUGCCACGCCCAGAAUUUUUGGUAUUAUAAAAGAUAUGGGCUGGUGUCACCGA-- ((......)).................((((((((..(((.........)))..))).)))))(((((.((((((((...((((((......))))))...)))))..))).))))).-- ( -27.50) >consensus GCGAAAAAGCAUAUGAAAUUAAAGAAAUCCCUAUACAAAAACUAGUUAAUUUAAUAUAAGGGGCGGUGCCACGCCCAGAAUUUUUGGUAUUAUAAAAGAUAUGGGCUGGUGUCACCCA__ ............................................................(((.((..(((.(((((...((((((......))))))...))))))))..)).)))... (-19.41 = -20.30 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:01 2006