Locus 308

Sequence ID 3L_DroMel_CAF1
Location 900,544 – 900,640
Length 96
Max. P 0.613698
window461

overview

Window 1

Location 900,544 – 900,640
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 89.79
Mean single sequence MFE -23.90
Consensus MFE -20.70
Energy contribution -21.24
Covariance contribution 0.54
Combinations/Pair 1.04
Mean z-score -1.32
Structure conservation index 0.87
SVM decision value 0.16
SVM RNA-class probability 0.613698
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 900544 96 - 23771897
UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCCA
.........((((((((((((((((....((.....)).)))))))))).)))))).(((....((.(((((.......))))).)).....))). ( -26.10)
>DroSim_CAF1 39623 95 - 1
UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUU-UCGA
....((((.((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..))))..-)))) ( -24.80)
>DroEre_CAF1 46154 96 - 1
UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCGA
....((((.((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..))))...)))) ( -24.80)
>DroYak_CAF1 44279 96 - 1
UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCGA
....((((.((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..))))...)))) ( -24.80)
>DroAna_CAF1 47621 78 - 1
UGUGUUGACGUGAGAAUUUACACGUCCUUUGUUAUGCACGCGUGUAAAUGUUUCGCCGGAU------------------UCUGAUUCCAUUUUCCA
.........((((((((((((((((....((.....)).)))))))))).)))))).(((.------------------..((....))...))). ( -19.00)
>consensus
UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCGA
.........((((((((((((((((....((.....)).)))))))))).)))))).(((..(((..((.......))..)))..)))........ (-20.70 = -21.24 +   0.54) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:53 2006