Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 900,544 – 900,640 |
Length | 96 |
Max. P | 0.613698 |
Location | 900,544 – 900,640 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 89.79 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -20.70 |
Energy contribution | -21.24 |
Covariance contribution | 0.54 |
Combinations/Pair | 1.04 |
Mean z-score | -1.32 |
Structure conservation index | 0.87 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 900544 96 - 23771897 UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCCA .........((((((((((((((((....((.....)).)))))))))).)))))).(((....((.(((((.......))))).)).....))). ( -26.10) >DroSim_CAF1 39623 95 - 1 UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUU-UCGA ....((((.((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..))))..-)))) ( -24.80) >DroEre_CAF1 46154 96 - 1 UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCGA ....((((.((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..))))...)))) ( -24.80) >DroYak_CAF1 44279 96 - 1 UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCGA ....((((.((((((((((((((((....((.....)).)))))))))).))))))((((..(((..((.......))..)))..))))...)))) ( -24.80) >DroAna_CAF1 47621 78 - 1 UGUGUUGACGUGAGAAUUUACACGUCCUUUGUUAUGCACGCGUGUAAAUGUUUCGCCGGAU------------------UCUGAUUCCAUUUUCCA .........((((((((((((((((....((.....)).)))))))))).)))))).(((.------------------..((....))...))). ( -19.00) >consensus UGUGUUGACGUGAGAAUUUGCACGUUCUUUGUUAUGCACGCGUGUAAAUGUUUCGCUGGAUCCAGAUUCAGUUUCCGAUGCUGAUUCCAUUUUCGA .........((((((((((((((((....((.....)).)))))))))).)))))).(((..(((..((.......))..)))..)))........ (-20.70 = -21.24 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:53 2006