Locus 3079

Sequence ID 3L_DroMel_CAF1
Location 8,918,414 – 8,918,504
Length 90
Max. P 0.861886
window4802

overview

Window 2

Location 8,918,414 – 8,918,504
Length 90
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 78.47
Mean single sequence MFE -29.51
Consensus MFE -20.99
Energy contribution -21.22
Covariance contribution 0.22
Combinations/Pair 1.15
Mean z-score -1.57
Structure conservation index 0.71
SVM decision value 0.83
SVM RNA-class probability 0.861886
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8918414 90 + 23771897
GCUGGUGGAGCUG---GGGCGGCUUGUUGAGAUUGAGAUU---CGGCAGGCCACCGCAACUGCAGGAAGAAGG--GACAACA-AGAUGAAG--AGGCUUUU
(((..((.((.((---.((.(((((((((((.......))---))))))))).)).)).)).)).......(.--.....).-........--.))).... ( -26.40)
>DroVir_CAF1 12986 93 + 1
GCUGCUGUAGCUGGGGCGGCGGCUUGUUGAGAUUGAGAUUGGGCGGCAGACCGCUGCAGCUGC--AGGGAAGG----UAACAGAGAUGAAG--AGGCGUUU
(((.(((((((((.((((((.(((..(..(........)..)..))).).))))).)))))))--))......----...((....))...--.))).... ( -33.80)
>DroPse_CAF1 52954 87 + 1
GCU---GGGG------CGGCGGCUUGCUGAGAUUUAGAUUGGGCGGCAGGCCGCUACAACUGCAGGGA---AG--GACAACAAAGAUGAAGAGAGGCUUUU
((.---(..(------..(((((((((((.(((....)))...)))))))))))..)..).)).....---..--.......................... ( -28.20)
>DroWil_CAF1 15058 96 + 1
GCUGUUGGAGCUG---GGGCGGCUUGCUCAGAUUGAGAUUGGGCGGCAGGCCGCUGCAACUGCAUAAGGGAGGAAGGUAACAAAGAUGAAG--AAGCUUUU
.((..((.((.((---.(((((((((((..(((....)))....))))))))))).)).)).))...))...((((((.............--..)))))) ( -28.66)
>DroYak_CAF1 11460 90 + 1
GCUGGUGGAGCUG---GGGCGGCUUGUUGAGAUUGAGAUU---CGGCAGGCCGCCGCAACUGCAGGAAGAAGG--GACAACA-AGAUGAAG--AGGCUUUU
(((..((.((.((---.((((((((((((((.......))---)))))))))))).)).)).)).......(.--.....).-........--.))).... ( -31.80)
>DroPer_CAF1 54313 87 + 1
GCU---GGGG------CGGCGGCUUGCUGAGAUUUAGAUUGGGCGGCAGGCCGCUACAACUGCAGGGA---AG--GACAACAAAGAUGAAGAGAGGCUUUU
((.---(..(------..(((((((((((.(((....)))...)))))))))))..)..).)).....---..--.......................... ( -28.20)
>consensus
GCUG_UGGAGCUG___CGGCGGCUUGCUGAGAUUGAGAUUGGGCGGCAGGCCGCUGCAACUGCAGGAAGAAGG__GACAACAAAGAUGAAG__AGGCUUUU
(((..............((((((((((((.(((....)))...))))))))))))((....))...............................))).... (-20.99 = -21.22 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:00 2006