Locus 3078

Sequence ID 3L_DroMel_CAF1
Location 8,916,730 – 8,916,833
Length 103
Max. P 0.500000
window4801

overview

Window 1

Location 8,916,730 – 8,916,833
Length 103
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 86.79
Mean single sequence MFE -36.67
Consensus MFE -34.73
Energy contribution -34.78
Covariance contribution 0.06
Combinations/Pair 1.14
Mean z-score -1.10
Structure conservation index 0.95
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8916730 103 - 23771897
GGCGCUGGUAGGCCGCGCUGCACGACGAGAGACGCCAACAGAGGGAGCAACGACACCGGUUGUUAAACGCAGCGCUGGCAGUGCCCAGAAUCAUA---ACAG-AAUC-
((((((.....((((((((((.((.(....).))((......)).((((((.......))))))....))))))).)))))))))..........---....-....- ( -34.70)
>DroVir_CAF1 11286 104 - 1
GGCGCUGGUAGGCCGCGCUGCAUGAUGAGAGACGCCAACAGAGAGAGCAACGACAUCGGUUGUUGGACGCAGCGCUGGCAGUGCCCAGAUUACUU---ACCA-AUACA
((((((.....((((((((((....(....)..((((((((...((.........))..))))))).)))))))).)))))))))..........---....-..... ( -35.90)
>DroPse_CAF1 51228 103 - 1
GGCGCUGGUAGGCCGCGCUGCACGACGAGAGACGCCAACAGAGAGAGCAGAGACACCGCCUGUUGGACGCAGCGCUGGCAGUGCCCAGACCCAUA---ACGA-AAAU-
((.(((((((.((((((((((.((.(....).))(((((((.(.(.(........)).))))))))..))))))).)))..)).)))).)))...---....-....- ( -38.90)
>DroWil_CAF1 13340 104 - 1
GGCGCUGGUAGGCCGCGCUGCACGAUGAAAGACGCCAACAGAGAGAGCAACGACAUCGGUUGUUGGACGCAGCGCUGGCAGUGCCCAGAUAUAUC---ACAACAACU-
((((((.....((((((((((.((.(....).))(((((((...((.........))..)))))))..))))))).)))))))))..........---.........- ( -36.70)
>DroMoj_CAF1 10222 107 - 1
GGCGCUGGUAGGCCGCGCUGCACGAUGAGAGACGCCAACAGAGAGAGCAACGACAUCGGUUGUUGGACGCAGCGCUGGCAAUGCCCAGAGAUAUUAUCAACA-AUACA
..(.((((...((((((((((.((.(....).))(((((((...((.........))..)))))))..))))))).))).....)))).)............-..... ( -34.90)
>DroPer_CAF1 52554 103 - 1
GGCGCUGGUAGGCCGCGCUGCACGACGAGAGACGCCAACAGAGAGAGCAGAGACACCGCCUGUUGGACGCAGCGCUGGCAGUGCCCAGACCCAUA---ACGA-AAAU-
((.(((((((.((((((((((.((.(....).))(((((((.(.(.(........)).))))))))..))))))).)))..)).)))).)))...---....-....- ( -38.90)
>consensus
GGCGCUGGUAGGCCGCGCUGCACGACGAGAGACGCCAACAGAGAGAGCAACGACACCGGUUGUUGGACGCAGCGCUGGCAGUGCCCAGACACAUA___ACAA_AAAC_
((((((.....((((((((((.((.(....).))(((((((.((...........))..)))))))..))))))).)))))))))....................... (-34.73 = -34.78 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:59 2006