Locus 3073

Sequence ID 3L_DroMel_CAF1
Location 8,880,204 – 8,880,317
Length 113
Max. P 0.599679
window4794

overview

Window 4

Location 8,880,204 – 8,880,317
Length 113
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 73.70
Mean single sequence MFE -44.18
Consensus MFE -23.84
Energy contribution -22.23
Covariance contribution -1.60
Combinations/Pair 1.58
Mean z-score -1.54
Structure conservation index 0.54
SVM decision value 0.13
SVM RNA-class probability 0.599679
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8880204 113 - 23771897
AG----UGAUUCCAGGGCAAAAUGCAGCUGAGCAUCGAAGUCUGCACGGAUGUGGAGGCCGUCAACCGGCCGGCUGGUCGUGGACAGGAUCCACCGAUGGCCUUGGAGCCGCCUUAG
.(----((..((((((((......(((((...........((..((....))..))(((((.....))))))))))((((((((.....)))).)))).))))))))..)))..... ( -47.00)
>DroVir_CAF1 164469 113 - 1
UG----UAACUCUAGGGCAAAAUUGAGCUGCAGGUGGAUGUGUGUACGGAGGCGGAGGCAUCCAAUUUGCCAGCGGGCCUGGGCCACCAGCCCCCCAUGGCCCUGGAGGCGCCCAAG
.(----(..(((((((((........(((((((((((((((.(...((....)).).)))))).))))).))))((((.(((....)))))))......)))))))))..))..... ( -51.30)
>DroPse_CAF1 169428 113 - 1
AU----CCAUUCCAGGGCAAAAUGGAACUACAAAUCGAUGUCUGUACGUCGGCGGAGGCCUCGAAUCAACCCGCAGGUCAUGGCCAUGACCCACCCUUGGCUUUGGAGAAGCCCGAG
.(----(((..((((((.....(((...........(((((....)))))(((.(.(((((((........)).))))).).))).....))).))))))...)))).......... ( -33.70)
>DroYak_CAF1 143077 113 - 1
AG----UGAUUCCAGGGCAAAAUGCAGCUGAGCAUCGAGGUCUGCACGGAUAUGGAGGCCGCCAACCGGCCGGCUGGUCGUGGACAGGAUCCACCGAUGGCCUUGGAGCCGCCUUAG
.(----((..((((((((......((((((........(((((.((......)).)))))(((....)))))))))((((((((.....)))).)))).))))))))..)))..... ( -48.50)
>DroAna_CAF1 137645 117 - 1
AGGAUAUAAUUUCAGGCCAAAAUGCAGCUGCAGAUAGAGGUCUGCACGGAUGUGGAGGCUUCCAACCGGCCGGCAGGACGAGGCCAGGAUCCACCAAUGGCCUUGGAGCCACCAUUG
.((...........((((....(((....)))....(((((((.(((....))).))))))).....))))(((....((((((((((.....))..))))))))..))).)).... ( -46.00)
>DroPer_CAF1 161310 113 - 1
AU----CCACUCCAGGGCAAAAUGGAACUACAAAUCGAUGUCUGUACGUCGGCGGAGGCCUCGAAUCAACCCGCAGGCCAUGGCCAUGACCCACCCUUGGCUUUGGAGAAGCCCGAG
..----...(((((((((....(((...........(((((....)))))(((.(.(((((((........)).))))).).))).....)))......)))))))))......... ( -38.60)
>consensus
AG____UAAUUCCAGGGCAAAAUGCAGCUGCAAAUCGAUGUCUGCACGGAGGCGGAGGCCUCCAACCGGCCGGCAGGUCGUGGCCAGGAUCCACCCAUGGCCUUGGAGCCGCCCUAG
.........(((((((((......................(((((......)))))(((((((........)).))))).(((.......)))......)))))))))......... (-23.84 = -22.23 +  -1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:52 2006