Locus 3071

Sequence ID 3L_DroMel_CAF1
Location 8,869,297 – 8,869,395
Length 98
Max. P 0.518348
window4791

overview

Window 1

Location 8,869,297 – 8,869,395
Length 98
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.48
Mean single sequence MFE -24.45
Consensus MFE -18.10
Energy contribution -18.22
Covariance contribution 0.11
Combinations/Pair 1.07
Mean z-score -1.09
Structure conservation index 0.74
SVM decision value -0.03
SVM RNA-class probability 0.518348
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8869297 98 - 23771897
UGUGGGUACCUAUGUGAACACCUACUAUCGGGAUCAGUUGAAAGUGCCCAUGACAUCCUUUUUGAUUUUGAGUAAGUAU---------UGUUUACACCAUUACAUUU
.((((....))))(((((((..((((.((((((((((..((..(((.......)))..)).))))))))))...)))).---------)))))))............ ( -19.90)
>DroVir_CAF1 150605 95 - 1
UGUGGGCACCUAUGUCAACACCUACUACCGCGACCAGCUGAAGGUGCCCAUGACUUCCUUUUUGAUUCUGAGUAAGAAC-AAUGGGCG------U----ACCCUCU-
.((((((((((.((....)).........((.....))...)))))))))).((.(((...(((.((((.....)))))-)).))).)------)----.......- ( -26.80)
>DroSec_CAF1 129268 107 - 1
UGUGGGUACCUAUGUGAACACCUACUAUCGGGAUCAGUUGAAGGUGCCCAUGACCUCCUUCUUGAUUUUAAGUAAGUAUACUUAAAAGUAUAUAUACCAUUACUUUU
.((((((((((.((....))(((......))).........))))))))))....................(((.(((((((....))))))).))).......... ( -26.50)
>DroSim_CAF1 127004 98 - 1
UGUGGGUACCUAUGUGAACACCUACUAUCGGGAUCAGUUGAAGGUGCCCAUGACAUCCUUCUUGAUUUUGAGUAAGUAC---------CAGUUAUAGCAUUACUUUU
.((((((((((.((....))(((......))).........))))))))))..................((((((((..---------........)).)))))).. ( -22.00)
>DroEre_CAF1 133147 98 - 1
UGUGGGUACCUAUGUGAACACCUACUACCGGGAUCAGUUGAAGGUGCCCAUGACCUCCUUCUUGAUUUUGAGUAAGUAC---------AGAUUGUGCCAUUGCUUUU
.((((((((((.((....))(((......))).........))))))))))..................((((((((((---------.....))))..)))))).. ( -25.80)
>DroYak_CAF1 132638 98 - 1
UGUGGGCACCUAUGUGAACACCUACUAUCGGGAUCAGUUGAAGGUGCCCAUGACCUCGUUCUUGAUCUUGAGUAAGUAU---------CGAUUAAGCCAUUACUUUU
.((((((((((.((....))(((......))).........)))))))))).........(((((((..((.......)---------))))))))........... ( -25.70)
>consensus
UGUGGGUACCUAUGUGAACACCUACUAUCGGGAUCAGUUGAAGGUGCCCAUGACCUCCUUCUUGAUUUUGAGUAAGUAC_________CGAUUAUACCAUUACUUUU
.((((((((((.((....))(((......))).........))))))))))........................................................ (-18.10 = -18.22 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:50 2006