Locus 307

Sequence ID 3L_DroMel_CAF1
Location 881,841 – 881,948
Length 107
Max. P 0.688090
window460

overview

Window 0

Location 881,841 – 881,948
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 79.05
Mean single sequence MFE -23.23
Consensus MFE -12.32
Energy contribution -13.10
Covariance contribution 0.78
Combinations/Pair 1.23
Mean z-score -2.01
Structure conservation index 0.53
SVM decision value 0.32
SVM RNA-class probability 0.688090
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 881841 107 + 23771897
ACCACCGCUUCCUGCCCGUCAAUCCUUUCACGGUAUUCCCAACCAUCCUAAGUAAUUCCUGGCUGGAGGGCUACUUCUUCCACAAGCCAAAUGUAGGAUUGCAUGCC
......((.((((((((((.((....)).))))..........................(((((((((((.....))))))...)))))...))))))..))..... ( -26.50)
>DroSec_CAF1 24729 107 + 1
ACCAUCGCUUCCUGCCCGUCAAUCCCUUCACGGUAUUCCCCACCAUCCUAACUAACUCCUGGCUGGAGGGCUACUUCUUCCACAAGCCAAAUGUAGGAUUGCAUUCU
......((.((((((((((.((....)).))))..........................(((((((((((.....))))))...)))))...))))))..))..... ( -25.70)
>DroSim_CAF1 19465 107 + 1
ACCACCGCUUCCUGCCCGUCAAUCCCUUCACGGUAUUCCCCACCAUACUAACUAACUCCUGGCUGGAGGGCUACUUCUUCCACAAGCCAAAUGUAGGAUUGCCUGCC
......((.((((((((((.((....)).))))..........................(((((((((((.....))))))...)))))...))))))..))..... ( -24.80)
>DroEre_CAF1 24848 103 + 1
ACCACCGCUUCCUGCCCGUCAGUCCCUUUACAGUGUUCCCCACCAUCCAAUCCGACUCCUGGCUGGAUAGCUACUUCUUCCACAAGCCAAAUGUAGGAUUUCC----
.........((((((..(((.((......)).(((.....)))..........)))...((((((((...........)))...)))))...)))))).....---- ( -18.50)
>DroYak_CAF1 24932 103 + 1
ACCACCGCUUCCUGCCCGUCAGCCCCUUUACAGUGUUCCCCAUCAUCCAAACUGACUCCUGGCUGGAAAACUACUUCUUCCACAAGCCAAAUGUAGGAUUAUC----
.........((((((..(((((..........(((.....)))........)))))...(((((((((.........))))...)))))...)))))).....---- ( -20.47)
>DroAna_CAF1 23995 106 + 1
ACCACCGCUUCCUGCCUGUCAGUCCCCUAACAAUGUUUCCAGAGUGGCCGCCGGGCCACUGGCUGGAAAACUAUUUCUAUUUCAAACCCAAUGUAUGUAUUUU-UCC
........((((.((((((.((....)).)))..........(((((((....)))))))))).))))...................................-... ( -23.40)
>consensus
ACCACCGCUUCCUGCCCGUCAAUCCCUUCACAGUAUUCCCCACCAUCCUAACUAACUCCUGGCUGGAGAGCUACUUCUUCCACAAGCCAAAUGUAGGAUUGCC__CC
.........((((((((((.((....)).))))..........................((((((((((....)))))......)))))...))))))......... (-12.32 = -13.10 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:51 2006