| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,857,502 – 8,857,592 |
| Length | 90 |
| Max. P | 0.979652 |
| Location | 8,857,502 – 8,857,592 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 78.10 |
| Mean single sequence MFE | -20.46 |
| Consensus MFE | -15.67 |
| Energy contribution | -16.53 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.979652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8857502 90 + 23771897 AAAAC-----AAAAAAAA---------AAAAAAUAGAAGUGAGUGGCCGAGCUUAAUGAAAUUUUCAUGUUUCAUUGGGAAAGCCAUUUGGCCUGCUUUAUAUU .....-----........---------........((((((((((((....(((((((((((......)))))))))))...))))))).....)))))..... ( -21.50) >DroSec_CAF1 117418 83 + 1 AAAAC------------A---------AAAAAAUAGAAAUGAGUGGCCGAGCUUAAUGAAAUUUUCAUGUUUCAUUGGGAAAGCCAUUUGGCCUGCUUUAUAUU .....------------.---------..(((.(((...((((((((....(((((((((((......)))))))))))...))))))))..))).)))..... ( -20.70) >DroSim_CAF1 113853 83 + 1 AAAAC------------A---------AAAAAAUAGAAGAGAGUGGCCGAGCUUAAUGAAAUUUUCAUGUUUCAUUGGGAAAGCCAUUUGGGCUGCUUUAUAUU .....------------.---------..(((.(((....(((((((....(((((((((((......)))))))))))...)))))))...))).)))..... ( -21.70) >DroEre_CAF1 121663 84 + 1 CAAAC---------AAAAAAAGUG---------UAGA--AGAGUGCCCGGGCUUAAUGAAAUUUUCAUGUUUCAUUGGGAAAGCCAUUUGGCCUGCUUUAUAUU .....---------......((((---------((((--..((.(((..(((((((((((((......)))))))))....))))....)))))..)))))))) ( -22.10) >DroYak_CAF1 120677 103 + 1 AAAACGAAAAAAA-AAAAAAAGCGAAUAAAAAAUAGAAGAGAGUGGCCGAGCUUAAUGAAAUUUUCAUGUUUCAUUGGGAAAGCCAUUUGGCCUGCUUUAGAUU .............-....((((((................(((((((....(((((((((((......)))))))))))...)))))))....))))))..... ( -21.85) >DroAna_CAF1 116873 76 + 1 -AAAU------------A--------------GUAAAAGAAA-AAGCCAAGCUUAAUGAAAUUUUCAUGUUUCAUUGGGAAAAGCAUUUGGAGUACUUUAGAUU -....------------(--------------(((.....((-(.((....(((((((((((......)))))))))))....)).)))....))))....... ( -14.90) >consensus AAAAC____________A_________AAAAAAUAGAAGAGAGUGGCCGAGCUUAAUGAAAUUUUCAUGUUUCAUUGGGAAAGCCAUUUGGCCUGCUUUAUAUU ........................................(((((((....(((((((((((......)))))))))))...)))))))............... (-15.67 = -16.53 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:48 2006