Locus 3067

Sequence ID 3L_DroMel_CAF1
Location 8,855,438 – 8,855,547
Length 109
Max. P 0.552196
window4785

overview

Window 5

Location 8,855,438 – 8,855,547
Length 109
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 76.00
Mean single sequence MFE -25.50
Consensus MFE -15.36
Energy contribution -17.08
Covariance contribution 1.72
Combinations/Pair 1.14
Mean z-score -1.58
Structure conservation index 0.60
SVM decision value 0.04
SVM RNA-class probability 0.552196
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8855438 109 - 23771897
AGCCCAUGGCAUGCCU-CCAUACCAUCUUACCAGUAUACCAACCGAUCCAAACCGGAGGGGCCUCGUCGACUGGAGCCCCUACAAAAUGUCAAAGUAAUUGGAUGACUUU
.....((((.(((...-.))).))))....(((((.(((...(((........)))((((((..((.....))..)))))).............))))))))........ ( -26.40)
>DroSec_CAF1 115404 95 - 1
AC---------------CCAUACCAUCCUACGAGUAUACCAUCCGAUCCCAACCGGAGGGGCCUCGUCGACUGGAACCCCUACACAAUGUCAAAGUAAUUGGAUGACUUU
..---------------......(((((.(((((....((.((((........)))).))..))))).(((.((....))........))).........)))))..... ( -21.90)
>DroSim_CAF1 111822 96 - 1
AC-------------C-CCAUACCAUCCUACGAGUAUACCAUCCGAUCCCAACCGGAGGGGCCUAGUCGACUGGAGCCCCUACACAAUGUCAAAGUAAUUGGAUGACUUU
..-------------.-......((((((((..........((((........))))(((((((((....)))).)))))..............)))...)))))..... ( -27.70)
>DroEre_CAF1 119635 95 - 1
ACCCCAUGGCUUGGCCC------CAUCCU------AUGCCAUCCGAUCCCAACCAGAGGGGCCUG---GACUCGAGCCCCUACACAAUGUCAAAGUAAUUGGAUGACUUU
....(((((..((....------))..))------))).((((((((..(......((((((.((---....)).))))))((.....))....)..))))))))..... ( -26.70)
>DroYak_CAF1 118562 101 - 1
ACCCCAUGGCAUGGCCCCCAUAGCAUCCA------AUUGCAUCCGAUUCCAAACAGAGGGGCCUG---GACCAAAGACCCUACACAAUGUCAAAGUAAUUGGAUGACUUU
.....((((........))))((((((((------(((((.((((..(((........)))..))---)).....(((..........)))...))))))))))).)).. ( -24.80)
>consensus
ACCCCAUGGC_UG_CC_CCAUACCAUCCUAC_AGUAUACCAUCCGAUCCCAACCGGAGGGGCCUCGUCGACUGGAGCCCCUACACAAUGUCAAAGUAAUUGGAUGACUUU
.......................................((((((((..(......((((((((((....)))).))))))((.....))....)..))))))))..... (-15.36 = -17.08 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:44 2006