Locus 3063

Sequence ID 3L_DroMel_CAF1
Location 8,848,934 – 8,849,028
Length 94
Max. P 0.663818
window4778

overview

Window 8

Location 8,848,934 – 8,849,028
Length 94
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.88
Mean single sequence MFE -22.67
Consensus MFE -17.79
Energy contribution -17.68
Covariance contribution -0.11
Combinations/Pair 1.24
Mean z-score -1.48
Structure conservation index 0.78
SVM decision value 0.27
SVM RNA-class probability 0.663818
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8848934 94 - 23771897
GCAU------GCAUACAUACACA------CACAUAUAUCAUGCCGUGGCCCAGAAAAGUAUGCUAUGGCAAACUGUUUCUGGCAACGGACUGCCAAAUUGCAAAAG
(((.------(((..........------..(((.....)))((((.(((.((((((((.(((....))).))).)))))))).))))..))).....)))..... ( -23.90)
>DroPse_CAF1 135221 86 - 1
-------GUUAGAUGCA------------UGCAUAUAUCAUGACGUGGCCCAGAAAAGUAUGCUAUGGCAAAAUGUUUCUGGCAACGAGCUGCCAAAUUGCAA-AG
-------((((((((..------------......)))).))))(..(((((((((..(.(((....))).)...)))))))......))..)..........-.. ( -18.20)
>DroSec_CAF1 109013 96 - 1
GCAU------GCAUACAUACACA----CACACAUAUAUCAUGCCGUGGCCCAGAAAAGUAUGCUAUGGCAAACUGUUUCUGGCAACGGACUGCCAAAUUGCAAAAG
(((.------(((..........----....(((.....)))((((.(((.((((((((.(((....))).))).)))))))).))))..))).....)))..... ( -23.90)
>DroEre_CAF1 112911 91 - 1
GCAU------ACAUACAUAC---------CACAUAUAUCAUGCUGUGGCCCAGAAAAGUAUGCUAUGGCAAACUGUUUCUGGCAACGGACUGCCAAAUUGCAAAAG
(((.------.........(---------((((..........))))).((((((((((.(((....))).))).)))))))....((....))....)))..... ( -21.70)
>DroYak_CAF1 112065 100 - 1
GCAU------GCAUGCAUACACAUACAUACACAUAUAUCAUGCCGUGGCCCAGAAAAGUAUGCUAUGGCAAAAUGUUUCUGGCAACGAACGGCCAAAUUGCAAAAG
((((------(.(((......))).))).............(((((.(((.(((((..(.(((....))).)...)))))))).....)))))......))..... ( -23.10)
>DroAna_CAF1 109504 94 - 1
GGACAGGGCAGGAUGCAU------------ACAUAUAUCAUGAUGUGGCCCAGAAAAGUAUGCUACAGAAAACGGUUUCUGGCAACGGGCUGCCAAAUUGCCAAAG
......(((((...(((.------------.(((((......)))))((((.....((....)).((((((....)))))).....)))))))....))))).... ( -25.20)
>consensus
GCAU______GCAUACAUAC_________CACAUAUAUCAUGCCGUGGCCCAGAAAAGUAUGCUAUGGCAAACUGUUUCUGGCAACGGACUGCCAAAUUGCAAAAG
........................................(((((((((............)))))))))...(((...(((((......)))))....))).... (-17.79 = -17.68 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:37 2006