Locus 306

Sequence ID 3L_DroMel_CAF1
Location 876,446 – 876,559
Length 113
Max. P 0.966007
window459

overview

Window 9

Location 876,446 – 876,559
Length 113
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 93.45
Mean single sequence MFE -25.26
Consensus MFE -22.89
Energy contribution -22.93
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.58
Structure conservation index 0.91
SVM decision value 1.59
SVM RNA-class probability 0.966007
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 876446 113 + 23771897
GGUUACUUUUGUUAUGGUCUCGAAGACCAAAUCAAAUAGAUAUUUCCUUUACUAACAAUUUUUGCUCAUGUAGAUGGAAGUUUAAACAUGAAAGUAACGAGCUGAAUAAAUUA
.((((((((..(..(((((.....)))))............(((((((((((.................))))).))))))......)..))))))))............... ( -23.73)
>DroSec_CAF1 19336 113 + 1
GGUUACUUUUGUAAUGGUCUCGAAGACCAAAUCAAAUAGAUACUUCCUUUGCUAACAAUUUUUGCUCACGUAGAUGGAAGUUUAAACAUGAAAGUAACGAGCUGAACACAUUA
.((((((((..(..(((((.....)))))............(((((((((((.................))))).))))))......)..))))))))............... ( -26.03)
>DroSim_CAF1 14099 113 + 1
GGUUACUUUUGUAAUGGUCUCGAAGACCAAAUCAAAUAGAUACUUCCUUUGCUAACAAUUUUUGCUCACGUAGAUGGAAGUUUAAACAUGAAAGUAACGAGCUGAACACAUUA
.((((((((..(..(((((.....)))))............(((((((((((.................))))).))))))......)..))))))))............... ( -26.03)
>DroEre_CAF1 19417 113 + 1
GGUUACUUUGGUUAUGGUCUCGAAGACCAAAUCAAAUAGAAUCUUCCUUUACUAACAAUUUUUGCUCAGGUAGAUGGAAGUUUGUACAUGAAAGUAACGAGCUGAGCACAUUA
.((((((((((((.(((((.....)))))))))...((.((.(((((((((((...............)))))).))))).)).))....))))))))............... ( -26.86)
>DroYak_CAF1 19474 113 + 1
GAUUACUUUGGUUAUGGUCUCGAAGACCGAAUCAAAUAGUUUCUUCCUUUACUAACAAUUUUUGCUCAGGUAGAUGGAAGUUUGAACAUGAAAGUAACGAGCUGAACACAUUA
..(((((((((((.(((((.....))))))))).....(((((((((((((((...............)))))).)))))...))))...)))))))................ ( -23.66)
>consensus
GGUUACUUUUGUUAUGGUCUCGAAGACCAAAUCAAAUAGAUACUUCCUUUACUAACAAUUUUUGCUCACGUAGAUGGAAGUUUAAACAUGAAAGUAACGAGCUGAACACAUUA
.(((((((((((..(((((.....))))).............((((((((((.................))))).))))).......)))))))))))............... (-22.89 = -22.93 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:50 2006