Locus 3059

Sequence ID 3L_DroMel_CAF1
Location 8,843,974 – 8,844,080
Length 106
Max. P 0.916122
window4772

overview

Window 2

Location 8,843,974 – 8,844,080
Length 106
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 84.11
Mean single sequence MFE -29.22
Consensus MFE -20.45
Energy contribution -21.95
Covariance contribution 1.50
Combinations/Pair 1.11
Mean z-score -2.26
Structure conservation index 0.70
SVM decision value 1.11
SVM RNA-class probability 0.916122
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8843974 106 - 23771897
AUAUAGCUAAAUUAUUGAGUGUUGCUGACAGCAUCUGGCAUUAUUGCAGCCAAUUGAUGAUGCUAGGUGCAGGAAAUGAUUCCAUCAAGUGGAU--UACCUGGAUGAA
...........(((((.((.((..((.((.((((((((((((((((........)))))))))))))))).((((....)))).....))))..--.)))).))))). ( -31.40)
>DroSec_CAF1 104185 106 - 1
AUAUAGCUAAAUUAUUGAGUGUUGCUGACAGCAUCUGGCAUUAUUGCAGCCAAUUGAUGAGGCUAGGUGCAGGAAAUGAAUCCAUCAAGUGGAU--UACCUGGAUGAA
...(((((...((((..(((((((....)))))).((((.........)))).)..))))))))).((.((((.....(((((((...))))))--).)))).))... ( -27.90)
>DroSim_CAF1 104982 106 - 1
AUAUAGCUAAAUUAUUGAGUGUUGCUGACAGCAUCUGGCGUUAUUGCAGCCAAUUGAUGAGGCUAGGUGCAGGAAAUGAAUCCAUCAAGUGGAU--UACCUGGAUGAA
...((((...(((....)))...))))...(((((((((.((((((........)))))).)))))))))(((.....(((((((...))))))--).)))....... ( -29.40)
>DroYak_CAF1 107095 92 - 1
AGACGGCUAAAUUAUUGAGUGCUGCUGACAGCACCUGGCAUUAAU----------------GCCAGAUACAGGAAAUUAUUCCAUCAAAUGGCUGCUACAUGGAUGAA
((.((((((.....((((((((((....))))))((((((....)----------------))))).....((((....)))).)))).))))))))........... ( -28.20)
>consensus
AUAUAGCUAAAUUAUUGAGUGUUGCUGACAGCAUCUGGCAUUAUUGCAGCCAAUUGAUGAGGCUAGGUGCAGGAAAUGAAUCCAUCAAGUGGAU__UACCUGGAUGAA
...((((...(((....)))...))))...(((((((((.((((((........)))))).)))))))))............((((....((......))..)))).. (-20.45 = -21.95 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:32 2006