| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,830,122 – 8,830,212 |
| Length | 90 |
| Max. P | 0.603060 |
| Location | 8,830,122 – 8,830,212 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 82.76 |
| Mean single sequence MFE | -34.32 |
| Consensus MFE | -23.70 |
| Energy contribution | -23.95 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8830122 90 - 23771897 CAGUU---------GUUGCAGUUUGCAGCCAAGCGAGCGACAAUGACGACC-------GGCGACAGUCUGUGCUGAAAGUCUGCGCCCCGUUAAUUUGGCAACUGC (((((---------((((..((((((......))))))..)..(((((...-------((((.(((.((........)).))))))).)))))....)))))))). ( -32.30) >DroSec_CAF1 90299 85 - 1 --------------GCUGCAGUUGGCAGCCAAGCGAGCGACAAUGACGACC-------GGCGACAGUCUGUGCUGAAAGUCUGCGCCCCGUUAAUUUGGCAACUGC --------------...(((((((.(((((....).)).....(((((...-------((((.(((.((........)).))))))).)))))...)).))))))) ( -29.90) >DroSim_CAF1 91071 99 - 1 CAGUUGUUGCAGUUGCUGCAGUUGGCAGCCAAGCGAGCGACAAUGACGACC-------GGCGACAGUCUGUGCUGAAAGUCUGCGCCCCGUUAAUUUGGCAACUGC ((((((((...((((((((..((((...)))))).))))))..(((((...-------((((.(((.((........)).))))))).)))))....)))))))). ( -36.20) >DroEre_CAF1 94344 98 - 1 CAGUUGCAGCAGUUGCUGCAGUUGGCAGCCAAGCGAGCGACAAUGACGACC-------GGCGACAGUCUGUGCUGAAAGUCUGCGCC-CGUUAAUUUGGCAACUGC (((((((.((.((((((((.....)))))..)))..))..((((((((...-------((((.(((.((........)).)))))))-)))))..)))))))))). ( -37.40) >DroYak_CAF1 92710 97 - 1 CUG---------CUGCUGCAGUUGGCAGCCAAGCGAGCGACAAUGACGACCGGCGACCGGCGACAGUCUGUGCUAAAAGUCUGCGCCCCGUUAAUUUGGCAACUGC ...---------.....(((((((.(((...((((.(((.((..(((....(((.((.(((....))).)))))....))))))))..))))...))).))))))) ( -31.10) >DroAna_CAF1 91958 78 - 1 ----------AAUCGCUGCAGUUGCCA-----------GACAAUGACGACC-------GGCGACAGUCUGUGCCGAAAGACUGCGCCCCGUUAAUUUGGCAACUGC ----------.......((((((((((-----------((...(((((...-------((((.((((((........)))))))))).))))).)))))))))))) ( -39.00) >consensus CAG_________UUGCUGCAGUUGGCAGCCAAGCGAGCGACAAUGACGACC_______GGCGACAGUCUGUGCUGAAAGUCUGCGCCCCGUUAAUUUGGCAACUGC .................(((((((.((((.......)).....(((((..........((((.(((.((........)).))))))).)))))...)).))))))) (-23.70 = -23.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:28 2006