Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,804,060 – 8,804,158 |
Length | 98 |
Max. P | 0.999480 |
Location | 8,804,060 – 8,804,158 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 98.37 |
Mean single sequence MFE | -22.46 |
Consensus MFE | -21.58 |
Energy contribution | -21.82 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.48 |
Structure conservation index | 0.96 |
SVM decision value | 3.64 |
SVM RNA-class probability | 0.999480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8804060 98 + 23771897 UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCUUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC ((((.((((((((((..((((........((((.((((....(....)...)))))))).......))))..)))))))))).)).)).......... ( -22.86) >DroSec_CAF1 64169 98 + 1 UCCGUACAGUACAAAUCCGUAUCUCCAUCUAUAUCUCUUUCUGAUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC ((((.((((((((.(..((((.(((((.....(((.......))).....)))))...........))))..).)))))))).)).)).......... ( -21.60) >DroSim_CAF1 65175 98 + 1 UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCUUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC ((((.((((((((((..((((........((((.((((....(....)...)))))))).......))))..)))))))))).)).)).......... ( -22.86) >DroEre_CAF1 67602 98 + 1 UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCUUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC ((((.((((((((((..((((........((((.((((....(....)...)))))))).......))))..)))))))))).)).)).......... ( -22.86) >DroYak_CAF1 66879 98 + 1 UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCAUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC ((((.((((((((((..((((.(((((.......(.......).......)))))...........))))..)))))))))).)).)).......... ( -22.14) >consensus UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCUUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC ((((.((((((((((..((((........((((.((((....(....)...)))))))).......))))..)))))))))).)).)).......... (-21.58 = -21.82 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:26 2006