| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,803,426 – 8,803,516 |
| Length | 90 |
| Max. P | 0.988099 |
| Location | 8,803,426 – 8,803,516 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.24 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -16.53 |
| Energy contribution | -16.20 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.65 |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.988099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8803426 90 + 23771897 -----------UCUGUUUCGUGUAAUUGAGUGAAAAAUAAUUAUUAUUGAUUAGCCGACCUUGACUUGGUAUUUACGCGUUUACGCACAAUUACAUGAUAC-------- -----------...((.(((((((((((.(((((...((((((....))))))(((((.......))))).)))))(((....))).))))))))))).))-------- ( -25.90) >DroVir_CAF1 75099 109 + 1 UCACGCAGCGCGGCGCGGCGCGUAAUUGAGUGAAAAAUAAUUAUUAUUGAUUAACCGACCUUGACUUGGUAUUUACACGUUUACGCACAAUUACGAGGCAGCAGCAGCA ....((.((...((...((.((((((((.(((.....((((((....))))))(((((.......))))).............))).))))))))..)).)).)).)). ( -28.80) >DroPse_CAF1 73636 92 + 1 UC-UGCGGCGUUGUGUGGCGUGUAAUUGAGUGAAAAAUAAUUAUUAUUGAUUAACCGACCUUGACUUGGUCUUU--------ACGCACAAUUACAACACAC-------- ..-.........(((((...((((((((.(((.....((((((....))))))...((((.......))))...--------.))).)))))))).)))))-------- ( -25.70) >DroYak_CAF1 66252 90 + 1 -----------UUUGUAUCGUGUAAUUGAGUGAAAAAUAAUUAUUAUUGAUUAACCGACCUUGACUUGGUAUUUACGCGUUUACGCACAAUUACAUGAUAC-------- -----------...((((((((((((((.(((((...((((((....))))))(((((.......))))).)))))(((....))).))))))))))))))-------- ( -29.50) >DroMoj_CAF1 81671 94 + 1 UCACGCAGCGCG-----GCGCGUAAUUGAGUGAAAAAUAAUUAUUAUUGAUUAACCGACCUUGACUUGGUAUUUACACGUUUACGCACAAUUACAAAGC---------- ...(((...)))-----(.((((((.((.(((((...((((((....))))))(((((.......))))).))))).)).)))))).)...........---------- ( -19.60) >DroAna_CAF1 66557 86 + 1 ---------------CCCCGUGUAAUUGAGUGAAAAAUAAUUAUUAUUGAUUAACCGACCUUGACUCGGUAUUUACGCGUUUACGCACAAUUACAAGAUAC-------- ---------------.....((((((((.(((((...((((((....))))))(((((.......))))).)))))(((....))).))))))))......-------- ( -22.30) >consensus ___________U_UGUGGCGUGUAAUUGAGUGAAAAAUAAUUAUUAUUGAUUAACCGACCUUGACUUGGUAUUUACGCGUUUACGCACAAUUACAAGACAC________ ....................((((((((.(((.....((((((....))))))(((((.......))))).............))).)))))))).............. (-16.53 = -16.20 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:25 2006