Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,786,908 – 8,787,019 |
Length | 111 |
Max. P | 0.829006 |
Location | 8,786,908 – 8,787,019 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -16.38 |
Energy contribution | -17.72 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.22 |
Mean z-score | -2.18 |
Structure conservation index | 0.63 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8786908 111 + 23771897 CCCUCUAAUUUU---CAACCGCGAGAUAACUUUCUGUUGUUCUUGCGACUCAUCAACGUCAAGAAUCAACAGACUCGACAACGUCGUCAUCAUCA---UCAUCGCGUCAUAGUUAUC ............---....((((((((.....(((((((((((((((.........)).)))))).)))))))...(((......)))......)---)).)))))........... ( -27.40) >DroSec_CAF1 47295 111 + 1 CCCCCUAAUUUU---CAACCGCGAGAUAACUUUCAGUUGUUCUUGCGACUCAUCAACGUCAAGAAUCAACAGACCCGACAACGUCGUCAUCAUCC---UCAUCGCGGCAUAGUUAUC .....(((((..---...((((((((.........((((((((((((.........)).)))))).))))......(((......))).......---)).))))))...))))).. ( -24.60) >DroSim_CAF1 48104 111 + 1 CCCCCUAAUUUU---CAGCCGCGCGAUAACUUUCUGUUGUUCUUGCGACUCAUCAACGUCAAGAAUCAACAGACCCGACAACGUCGUCAUCAUCC---UCAUCGCGUCAUAGUUAUC ............---.....(((((((.....(((((((((((((((.........)).)))))).)))))))...(((......))).......---..))))))).......... ( -28.20) >DroEre_CAF1 50029 111 + 1 CCCCCUAAUUUC---CAGCCGCGAGAUAAGUUUCUGUUGUUCUUGCGACUCAUCAACGUCGAGAAUCAACAGACCCGACGACGUCGUCAUCAUCC---UCAUCGCGUCAUAGUUAUC ............---..(.(((((((...(..(((((((((((..((((........)))))))).)))))))..)((((....)))).......---)).))))).)......... ( -30.30) >DroYak_CAF1 48847 111 + 1 UUCCCAAAUCUC---CAACCGCGAGAUAAGUUUCUGUUGUUCCAGCGACUCAUCAACGUCAAGAAUCAACAUAGCCGACGACGUCGUCAUCAUUC---UCAACGCGUCAUAGUUAUC ............---....((((.(((.((((.(((......))).)))).)))......................((((....)))).......---....))))........... ( -19.60) >DroAna_CAF1 48732 107 + 1 CCCCCCAGCCUUGCCUUAUUGCCAAGUAGUUCUAUGUU-UUUUUGCGACUCAUCAACGUCAAGAGUCCAAAGACGAGGCGACGUCAUCAUCAUCGCACGAGUCGCG----AG----- .........((((.(.....).))))............-...(((((((((.....((((...........))))..((((.(.......).))))..))))))))----).----- ( -25.40) >consensus CCCCCUAAUUUU___CAACCGCGAGAUAACUUUCUGUUGUUCUUGCGACUCAUCAACGUCAAGAAUCAACAGACCCGACAACGUCGUCAUCAUCC___UCAUCGCGUCAUAGUUAUC ...................(((((........(((((((((((((((.........)).)))))).)))))))...(((......))).............)))))........... (-16.38 = -17.72 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:23 2006