| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,783,115 – 8,783,223 |
| Length | 108 |
| Max. P | 0.653409 |
| Location | 8,783,115 – 8,783,223 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 74.73 |
| Mean single sequence MFE | -35.87 |
| Consensus MFE | -19.66 |
| Energy contribution | -18.75 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8783115 108 - 23771897 CCAUUAGUGCACCUGGCUGGCACUUCGGUGCCACAAUACCCCGAUGAGCUAUUGAAGUAAGUUUGUCCAGGACAAUAGUAGAGGCCUCCUGCCCAGU------UAGUUGCAUUG ....(((((((.(((((((((((....)))))......((..((..((((.........))))..))..)).........(.(((.....)))))))------))).))))))) ( -35.80) >DroSim_CAF1 44316 108 - 1 CCACUAGUGCACCUGGCUGGCACUUCGGUGCCACAAUACCUCGAUGUGCUAUUGAAGUACGUUUGUCCAGGACAAUAAUAGAGGCCUCCUGCCCAGU------UAGUUGCAUUG ....(((((((.(((((((((((....)))))......((((((((((((.....))))))))((((...))))......))))..........)))------))).))))))) ( -39.30) >DroEre_CAF1 46897 108 - 1 CCAUCAGUGCACCUGGCUGGCACUUCGGUGCCACAAUACCUGGAUGAGCUAUUGAAGUAGGUUUGCCCAGGACAGUAGUAGAGGCCUCCCGCCCAGU------UAUUUGCAUUC .....((((((..((((((((((....)))))......(((((..(((((.........)))))..))))).........(.(((.....)))))))------))..)))))). ( -36.90) >DroYak_CAF1 45354 108 - 1 CCAGUGGUGCACCUGGCUGGCACUGCGGCGCCGCAAUACUUCGAUGAGCUAUUGAAGUACGUUUGUCCAGGACAAUCGUAGAGGCCUCCUGCCCAGC------UACUUGCAUUC .....((((((..(((((((....((((.(((.(...(((((((((...)))))))))(((.(((((...))))).))).).)))...)))))))))------))..)))))). ( -38.30) >DroAna_CAF1 46149 108 - 1 CCAAAAGUGCAUCUGGGAGGAACUCCUGUUCCACAGUAACCAGAGGUGCUGUUGAAAUAAGUCAGACCAGGACAAUCAUAAAGAGCGCCAAUCCAGG------UAGAGUUAGUA ..........(((((((.(((((....)))))............((((((.((.......(((.......))).......)).))))))..))))))------).......... ( -29.04) >DroPer_CAF1 51697 114 - 1 CCAGCACUGCAUCUGGGUGGCAAUUUAGUGGUGCAGUACUUUGUGGAGCUGUCGUAAUAAGUCAGGCCAGGACAAUCGUUGAGAGCUCCUUUCCAGAUCAGACUGGUGGCAUUC ((((..(((.(((((((..((((..((.((...)).))..))))((((((.(((......(((.......)))......))).))))))..)))))))))).))))........ ( -35.90) >consensus CCAGUAGUGCACCUGGCUGGCACUUCGGUGCCACAAUACCUCGAUGAGCUAUUGAAGUAAGUUUGUCCAGGACAAUAGUAGAGGCCUCCUGCCCAGU______UAGUUGCAUUC .....(((((.(((((..(((((....))))).(((((.(.......).)))))............)))))...........(((.....)))...............))))). (-19.66 = -18.75 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:22 2006