Locus 3049

Sequence ID 3L_DroMel_CAF1
Location 8,779,354 – 8,779,447
Length 93
Max. P 0.589050
window4761

overview

Window 1

Location 8,779,354 – 8,779,447
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 69.69
Mean single sequence MFE -30.48
Consensus MFE -12.07
Energy contribution -12.77
Covariance contribution 0.70
Combinations/Pair 1.48
Mean z-score -1.74
Structure conservation index 0.40
SVM decision value 0.11
SVM RNA-class probability 0.589050
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8779354 93 - 23771897
GAGGCGUCACUGUAGUGGGCGUCUCGGUGGUUACAGUUGAAUCGGUGCUGCUUUCAGUUGUGCUCUCAGUGCUACUUUCAGUGGUACCGCCAG
((((((((((....)).))))))))((((((.((..(((((..((..(((....((....))....)))..))...)))))..)))))))).. ( -35.80)
>DroSec_CAF1 40150 78 - 1
GAGGCGUCACUGUAGUGG---UCUCGGUGGUUACAGUUGAAUCGGUACUGCUUUCAGUAGUGCUCUC------------AGUGGUACCGCCAG
(((((..(((....))))---))))((((((.((..((((...((((((((.....)))))))).))------------))..)))))))).. ( -32.30)
>DroSim_CAF1 40521 93 - 1
GAGGCGUUUCUGUAGUGGGCGUCUCGGUGGUUACAGUCGAAUCGGUGCUGCUUUCAGUGGAGCUCUCAGUGCUACUUUCAGUGGUACCGCCAG
(((((((((.......)))))))))(((((((.......))))(((((..((...(((((.((.....)).)))))...))..)))))))).. ( -33.10)
>DroEre_CAF1 41180 93 - 1
GAGGUAUCACUGUAGUGGGCGUCUCGGUGGUUACAGUAGAACCAGUGCUGCUUUCAGUGCUGCCCACAGUGCUACUUUCAGUGGUACUUUCAG
((((((((((((..((((((........((((.......))))((..(((....)))..))))))))((.....))..))))))))))))... ( -35.60)
>DroYak_CAF1 41513 81 - 1
GAGGUAUCACUGUAGUGGGCGUCUCGGUGGUUACAGUAGAAUCAGUGCUGCUUUCGGUGCUGCUCACAG------------UGGUGCUUUCAG
(((((((((((((...((((.(((.(.((....)).))))...((..(((....)))..))))))))))------------)))))))))... ( -28.50)
>DroPer_CAF1 47846 81 - 1
GGGGUUUCAUAGUGGUUGUAGGUACUGUAGGUAUUG-----UAGGUACUG----UAGGGGUGCUCUCUGU---ACUCUCAUUAGGAUCGGGUG
..(((((.((((((.((...(((((.....))))).-----.)).)))))----).(((((((.....))---))))).....)))))..... ( -17.60)
>consensus
GAGGCGUCACUGUAGUGGGCGUCUCGGUGGUUACAGUAGAAUCGGUGCUGCUUUCAGUGGUGCUCUCAGU___ACUUUCAGUGGUACCGCCAG
..(((...((((((((.(.((...)).).))))))))......(((((((((.........((.....)).........)))))))))))).. (-12.07 = -12.77 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:21 2006