Locus 3048

Sequence ID 3L_DroMel_CAF1
Location 8,764,317 – 8,764,437
Length 120
Max. P 0.624809
window4760

overview

Window 0

Location 8,764,317 – 8,764,437
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.61
Mean single sequence MFE -47.43
Consensus MFE -28.38
Energy contribution -27.63
Covariance contribution -0.74
Combinations/Pair 1.48
Mean z-score -1.80
Structure conservation index 0.60
SVM decision value 0.19
SVM RNA-class probability 0.624809
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8764317 120 + 23771897
AUCCAGGAGGCCCAGUUAUCCAACCCAGAGUUGCCCCUGGGCAGCGCCGAGCAGUUCCUUUUGACCCUGGCCUCCAUUUCGGAGCUGGAAGCUCGCCUGAAAUUGUGGGCUUUCCGUCUG
.....(((((((..((((...........((((((....))))))((...)).........))))...)))))))....((((.(.((((((((((........)))))))))).))))) ( -44.30)
>DroVir_CAF1 38309 120 + 1
AUACAGGAGGCACAGCUAUCGAAUCCAGAGCUGCCGCUGGGCAGCGCCGAGCAGUUCCUACUGACCCUGGCCUCCAUCACGGAGCUGGGCGCACGCCUUAAGCUGUGGGCCUUCCGUCUG
.....((((((.(((..............((((((....))))))......((((....))))...)))))))))...(((((...((((.(((((.....)).))).)))))))))... ( -49.50)
>DroGri_CAF1 35008 120 + 1
AUUCAAGAGGCACAGUUGUCGAAUCCAGACUUGCCGCUUGGCAGUGCCGAGCAAUUUCUCCUCACCUUAGCCACCAUCUCAGAGCUGGGCGCUCGUCUCAAGCUCUGGGCUUUCCGGCUG
.....(((((((.((((..........))))))))(((((((...)))))))....)))........(((((.....(((((((((((((....))))..)))))))))......))))) ( -42.10)
>DroWil_CAF1 43623 120 + 1
AUUCAGGAGGCUCAAAUGACUAAUCCAGAAUUACCGCUGGGCAGUGCCGAACAGUUUCUCUUGACAUUGGCUUCCAUAUCGGAGUUGGGAGCUCGCCUGAAGCUUUGGGCCUUUCGCUUA
...(..((((((((((.(.((..(((((........)))))(((.((.((.((((.((....)).))))(((((((.........)))))))))))))).)))))))))))))..).... ( -37.20)
>DroMoj_CAF1 36446 120 + 1
AUCCAGGAGGCGCAGCUGUCCAAUCCGGAACUGCCCCUGGGCAGCGCCGAGCAGUUUCUGCUCACGCUGGCCUCCAUCACAGAGCUGGGCGCACGCCUGAAGCUCUGGGCCUUCCGCCUG
.....((((((.((((..........((..(((((....)))))..))((((((...))))))..))))))))))....(((((((((((....))))..)))))))(((.....))).. ( -63.00)
>DroAna_CAF1 30209 120 + 1
AUCCAGGAGGCGCAGCUUUCGAAUCCGGAACUGCCUCUGGGAAGCGCCGAGCAGUUCCUCUUGACUUUGGCCUCCAUUUCAGAGCUGGGAGCUCGCCUCAAGCUCUGGGCCUUCCGCCUG
.....((((((.(((...((((....((((((((.((.((......))))))))))))..))))..)))))))))....(((((((..(((.....))).)))))))(((.....))).. ( -48.50)
>consensus
AUCCAGGAGGCACAGCUGUCGAAUCCAGAACUGCCGCUGGGCAGCGCCGAGCAGUUCCUCCUGACCCUGGCCUCCAUCUCAGAGCUGGGAGCUCGCCUGAAGCUCUGGGCCUUCCGCCUG
.....((((((.(((........(((((........)))))..((.....))..............)))))))))....((((((((((......)))..)))))))(((.....))).. (-28.38 = -27.63 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:20 2006