Locus 3046

Sequence ID 3L_DroMel_CAF1
Location 8,760,521 – 8,760,629
Length 108
Max. P 0.500000
window4757

overview

Window 7

Location 8,760,521 – 8,760,629
Length 108
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 75.33
Mean single sequence MFE -16.28
Consensus MFE -10.42
Energy contribution -10.42
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.13
Structure conservation index 0.64
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8760521 108 + 23771897
AUG-CUAACCAC--AACCAAACAAA---AAACACCAUACCAUGCCAAAAAUAGGCCAGAUUGUAACCGCCAUACCCGCUACCAUUCAAACCGGCGAUAGUCCGCCUCAGUCCUU
...-........--...........---..............(((.......)))..(((((.....((.......)).............((((......)))).)))))... ( -13.30)
>DroVir_CAF1 33897 102 + 1
AUG-CUAACCCAAUAUGUCACCCAC---AAUUGUCAU---ACGCCA-----AGGCCAAAUUGUAACCGCCAUUCCUGCAACCAUACAAAGCGGCGACAGCCCGCCGCAGUCAUU
.((-(........((((.((.....---...)).)))---).....-----.(((............)))......)))..........((((((......))))))....... ( -20.60)
>DroEre_CAF1 27628 110 + 1
AUG-CUAACCAC--AACCAAACAAA-ACAAACACCAUACCAUGCCGCAAAUAGGCCAAAUUGUAACUGCCAUACCCGCCACCAUUCAAACCGGCGACAGCCCGCCGCAGUCCCU
...-........--...........-................(((.......)))......(..(((((.......(....).........((((......)))))))))..). ( -15.20)
>DroYak_CAF1 27792 108 + 1
AUG-CUAACCAU--AACCAAACAAA---CAACACCAUACCAUGCCAUAAAUAGGCCAAAUUGUAACCGCCAUACCCGCCACCAUUCAAACCGGCGACAGUCCGCCUCAGUCCUU
...-........--...........---.......................((((...(((((...((((.....................)))))))))..))))........ ( -11.50)
>DroMoj_CAF1 32095 98 + 1
-----UAACCAAAUAUGUCACCCAC---AAUUGUCAU---AUGCCA-----AGGCCAAAUCGUAACCGCCAUUCCUGCAACCAUACAAAGCGGCGACAGUCCGCCGCAAUCGCU
-----.......(((((.((.....---...)).)))---))((..-----.(((............)))...................((((((......))))))....)). ( -20.30)
>DroAna_CAF1 26484 109 + 1
AUGUCUAACCAC--CACCACAAAAACGUAAACA-CAUACUAUGCCGAAA--AGGCCAAAUCGUAACCGCCAUACCCGCUACCAUCCAGGCCGGCGACAGCCCGCCGCCAUCGCU
............--............(((....-........(((....--.)))............((.......)))))......(((.((((......)))))))...... ( -16.80)
>consensus
AUG_CUAACCAC__AACCAAACAAA___AAACACCAUACCAUGCCA_AA__AGGCCAAAUUGUAACCGCCAUACCCGCAACCAUUCAAACCGGCGACAGCCCGCCGCAGUCCCU
..........................................(((.......)))....................................((((......))))......... (-10.42 = -10.42 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:17 2006