| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,758,762 – 8,758,868 |
| Length | 106 |
| Max. P | 0.515991 |
| Location | 8,758,762 – 8,758,868 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 68.87 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -12.51 |
| Energy contribution | -12.95 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.515991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8758762 106 + 23771897 ACUUCACAUGGUGAAAUGUGGUUCAUAGUGUGGCGUUUAUUAACUUGCAUUUUAUAAAAGUUUAAGACCAGGAAAGGAAAAUGAAGUUUCUGGAAUGCAUAGAAUA--- ....(((((.(((((......))))).)))))((((((...(((((.((((((.(((....)))...((......)))))))))))))....))))))........--- ( -22.10) >DroSec_CAF1 25319 82 + 1 ACUUCACAUGGUGAAAAGUGGUUCAUAGUGUGGCGU--------GUGCAUUUUAUUC---UGUA-------------ACAAUCAAGUUUCUGGAAUGGAGAGAAUA--- ((.((((((.(((((......))))).)))))).))--------.....((((((((---(..(-------------((......)))...)))))))))......--- ( -17.30) >DroYak_CAF1 26059 100 + 1 ACUUCACAUGGUGAAAAGUAGUUCAUCGUGUGGCGUUUAUUAACUUGCAUUUUAUGAAAGUUUUAAGACAG---------AACAAGUUUUAGGAGUGCAGAGCAGAUGA ....(((((((((((......)))))))))))(((((....)))(((((((((.((((((((((.....))---------)))...)))))))))))))).))...... ( -25.30) >consensus ACUUCACAUGGUGAAAAGUGGUUCAUAGUGUGGCGUUUAUUAACUUGCAUUUUAUAAAAGUUUAA___CAG______A_AAUCAAGUUUCUGGAAUGCAGAGAAUA___ ((.((((((.(((((......))))).)))))).)).........(((((((((....................................))))))))).......... (-12.51 = -12.95 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:16 2006