Locus 3044

Sequence ID 3L_DroMel_CAF1
Location 8,755,705 – 8,755,795
Length 90
Max. P 0.524190
window4755

overview

Window 5

Location 8,755,705 – 8,755,795
Length 90
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.63
Mean single sequence MFE -19.88
Consensus MFE -11.07
Energy contribution -11.27
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -2.07
Structure conservation index 0.56
SVM decision value -0.02
SVM RNA-class probability 0.524190
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8755705 90 + 23771897
CAAGUGACGUCGACACAGAUAAUUCCAUGUUGUCCGGUAAUUGUUCUGUAAAUGCAGAAAUAAUUACUUUCAAUGCGCCAAUAAAACAAC-------------------
...(((.(((.((....((((((.....)))))).((((((((((((((....)))).)))))))))).)).))))))............------------------- ( -19.40)
>DroVir_CAF1 28891 98 + 1
CAAGC---GUCGACACACAUAAUUUCAUGUUGUCCGGUAAUUGUUCUGUAAAUGCACAAAUAAUUACUUUCAAUGCGCCAAUAAAAAACGGGCUGAAA--------GAG
...((---((.((((.((((......)))))))).((((((((((.(((......)))))))))))))....))))(((...........))).....--------... ( -19.60)
>DroGri_CAF1 24555 106 + 1
CAAGC---GUCGACACACAUAAUUUCAUGUUGUCCGGUAAUUGUUCUGUAAAUGCACCAAUAAUUACUUUCAAUGCGCCAAUAAAAAGAAGAAAAAGAAAAAGAAAAAA
...((---((.((((.((((......)))))))).((((((((((.(((....)))..))))))))))......))))............................... ( -16.90)
>DroWil_CAF1 32370 90 + 1
CAAGCGUCGUCGACACACAUAAUUUCAUGUUGUCCGGUAAUUGUUCUGUAAAUGCAGAAAUAAUUACUUUCAAUGCGCCAAUAAAAAAAA-------------------
...((((....((((.((((......)))))))).((((((((((((((....)))).))))))))))......))))............------------------- ( -21.60)
>DroMoj_CAF1 26922 103 + 1
CAAGC---GCCGACACACAUAAUUCCAUGUUGUCCGGUAAUUGUUCUGUAAAUGCACAAAUAAUUACUUUCAAUGCGCCAAUAAAAAAAACGUAAACACAGAC---GAG
...((---((.((((.((((......)))))))).((((((((((.(((......)))))))))))))......))))............(((........))---).. ( -20.80)
>DroAna_CAF1 21941 90 + 1
CAAGC---GUCGACACAGAUAAUUCCAUGUUGUCCGGUAAUUGUUCUGUAAAUGCAGAAAUAAUUACUUUCUGUGCGCCAAUAAAACAAA----------------UAC
.....---(.((.((((((((((.....))))...((((((((((((((....)))).)))))))))).)))))))).)...........----------------... ( -21.00)
>consensus
CAAGC___GUCGACACACAUAAUUCCAUGUUGUCCGGUAAUUGUUCUGUAAAUGCACAAAUAAUUACUUUCAAUGCGCCAAUAAAAAAAA_________________A_
...((......((((.((((......)))))))).(((((((((..(((....)))...)))))))))......))................................. (-11.07 = -11.27 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:15 2006