Locus 3038

Sequence ID 3L_DroMel_CAF1
Location 8,726,535 – 8,726,625
Length 90
Max. P 0.988717
window4748

overview

Window 8

Location 8,726,535 – 8,726,625
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 91.89
Mean single sequence MFE -28.52
Consensus MFE -24.34
Energy contribution -24.54
Covariance contribution 0.20
Combinations/Pair 1.23
Mean z-score -2.04
Structure conservation index 0.85
SVM decision value 2.13
SVM RNA-class probability 0.988717
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8726535 90 - 23771897
GGUCUGUCAUGUUCUCAUGAAUGAAAGACAGCGAAAGGCAGGCCAAAGAUCCCGAGGGUCUACAACCUGAAGAAUAAUUCCCUUGGAUUA
(((((((((((....))))............(....))))))))...(((((.((((((((.(.....).)))......)))))))))). ( -25.50)
>DroSec_CAF1 7581 90 - 1
GGUCUGUCAUGUUCUCAUGAAUGAAAGACAGCGAAAGGCAGGGCAAAGAUGUCGAGGGUGUACAACCUGAAGAGGUGUUCCCUUGGAUCA
.((((.(((((....))))).....)))).((.....))........(((.(((((((...(((.(((....)))))).)))))))))). ( -27.10)
>DroSim_CAF1 7703 90 - 1
GGUCUGUCAUGUUCUCAUGAAUGAAAGACAGCGAAAGGCAGGCCAAAGAUCUCGAGGGUCUACAACCUGAAGAGGUGUUCCCUUGGAUUA
(((((((((((....))))............(....))))))))...((((.((((((...(((.(((....)))))).)))))))))). ( -32.00)
>DroEre_CAF1 9341 90 - 1
GGUCUGUCAUGUUCUCAUGAAUGAAAGACAGCGAAAGGCAGGCCAAAGAUCUCGCGGGUCUACAACCUGAAGAGGUGUCCCCUCGGAUUA
(((((((((((....))))............(....))))))))...((((.((.(((...(((.(((....)))))).))).)))))). ( -28.20)
>DroYak_CAF1 7585 90 - 1
GGUCUGUCAUGUUCUCAUGAAUGAAAGACAGCGGAAGGCAGGCCAAAGAUCUCGGGGGUCUACAACCUGAGGAGGAGUCUCCUCGAAUUA
((((((((.((((.((..........)).))))...))))))))......((((((.........))))))((((.....))))...... ( -29.80)
>consensus
GGUCUGUCAUGUUCUCAUGAAUGAAAGACAGCGAAAGGCAGGCCAAAGAUCUCGAGGGUCUACAACCUGAAGAGGUGUUCCCUUGGAUUA
(((((((((((....))))............(....))))))))...(((.(((((((......((((....))))...)))))))))). (-24.34 = -24.54 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:08 2006