Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,714,063 – 8,714,182 |
Length | 119 |
Max. P | 0.594636 |
Location | 8,714,063 – 8,714,182 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.78 |
Mean single sequence MFE | -49.92 |
Consensus MFE | -39.24 |
Energy contribution | -39.27 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.15 |
Mean z-score | -2.44 |
Structure conservation index | 0.79 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8714063 119 + 23771897 GCGAGCGACGACGGUCCUCGUCCUCCAAGCGACGGCGGGCGUCCUCCAGCUGGGAAAUGACCUGGCUCUUGGAGAACGAGACCGUGUCCA-GCUGAACCUUCAGAUCUUGGACGUCCUUG .((((.(((.((((((.((((.(((((((....((.((....)).))(((..((......))..)))))))))).))))))))))(((((-.((((....))))....)))))))))))) ( -55.50) >DroVir_CAF1 44241 119 + 1 UUGAGCGACGACGGUCUUCGUCUUCCAGGCGGCGGCGUGCAUCCUCCAACUGGGAGAUGACUUGGCUCUUGGAAAACGAGACUGUGUCCA-AUUGAACUUUGAGAUCUUGGACGUCCUUG ..(((.(((.(((((((.(((.(((((((.(((.(.((.((((..((....))..)))))).).)))))))))).))))))))))(((((-(..((.(.....).)))))))))))))). ( -48.40) >DroGri_CAF1 40447 119 + 1 UUGAGCGACGACGGUCUUCGUCUUCCAGGCGGCGGCGUGCAUCCUCCAGCUGGGAGAUGACUUGGCUCUUGGAAAACGUGACUGUGUCCA-AUUGAACUUUGAGAUCUUGGACGUCCUUG ..(((.(((.((((((..(((.(((((((.(((.(.((.((((..((....))..)))))).).)))))))))).))).))))))(((((-(..((.(.....).)))))))))))))). ( -46.50) >DroWil_CAF1 25692 119 + 1 GGGAGCGACGACGGUCUUCGUCUUCCAAACGGCGGCGUGCAUCUUCCAGUUGGGAGAUCACUUGGCUCUUGGAAAACGAGACGGUGUCCA-GCUGGGUCUUGAGAUCUUGGACGUCCUUG ..(((.(((.((.((((.(((.((((((..(((.(.(((.(((((((....)))))))))).).))).)))))).))))))).))(((((-...(((((....)))))))))))))))). ( -51.00) >DroMoj_CAF1 21808 119 + 1 UUGAGCGACGACGGUCUUCGUCUUCCAGGCGGCGGCGUGCAUCUUCCAGCUGGGAGAUGACUUGGCUCUUGGAAAACGAGACUGUGUCCA-AUUGAACUUUGAGAUCUUGGACGUCCUUG ..(((.(((.(((((((.(((.(((((((.(((.(.((.((((((((....)))))))))).).)))))))))).))))))))))(((((-(..((.(.....).)))))))))))))). ( -51.80) >DroPer_CAF1 20843 120 + 1 UGGAGCGACGACGGUCCUCGUCUUCCAAGCGACGGCGAGCAUCCUCCAGCUGGGAGAUGACUUGGCUCUUGGAAAACGAGACAGUGUCGACGCUGCACUUUGAGAUCUUGGACGUCCUUG ((.((((.((((.(((.((((.(((((((....(.((((((((..((....))..)))).)))).).))))))).)))))))...)))).)))).))............((....))... ( -46.30) >consensus UUGAGCGACGACGGUCUUCGUCUUCCAAGCGGCGGCGUGCAUCCUCCAGCUGGGAGAUGACUUGGCUCUUGGAAAACGAGACUGUGUCCA_ACUGAACUUUGAGAUCUUGGACGUCCUUG ..(((.(((.((((((.((((.(((((((.(.(((....((((.(((....))).))))..))).).))))))).))))))))))(((((..((........))....))))))))))). (-39.24 = -39.27 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:07 2006