Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,710,621 – 8,710,723 |
Length | 102 |
Max. P | 0.845694 |
Location | 8,710,621 – 8,710,723 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 83.37 |
Mean single sequence MFE | -22.52 |
Consensus MFE | -13.15 |
Energy contribution | -13.11 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.23 |
Mean z-score | -2.52 |
Structure conservation index | 0.58 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8710621 102 - 23771897 AUAUU-UGUGUUACUGCAC--ACAUCGAAGAGGAGAGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUUACUGUUCACUACACGAA ...((-(((((....(((.--....(((((.((((.(.....(((((((((((((......)))))))))))))))))).))))).....))).....))))))) ( -23.00) >DroSec_CAF1 16074 102 - 1 AUAUU-UGUGUUACUGCAC--ACAUCGAAGAGCGGAGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUUACUUUUCCAUAUACGAA .....-(((((....))))--).......((((((((.....(((((((((((((......)))))))))))))......))))))))................. ( -21.60) >DroSim_CAF1 16926 102 - 1 AUAUU-UGUGUUACUGCAC--ACAUCGAAGAAGGGAGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUUACUUUUCACUAUACGAA .....-(((((....))))--)....(((((((.((((....(((((((((((((......)))))))))))))......)))).))).))))............ ( -20.10) >DroEre_CAF1 15920 92 - 1 AUAUUUUGUGUUACUAGAC--ACAACGAAGCGG-GGUAAAACCUUUUAAAAAUCACAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUC----------AUACGAA .....(((((((....)))--)))).((.((((-((((....(((((((((((((......)))))))))))))....))))))))))----------....... ( -24.40) >DroYak_CAF1 16244 104 - 1 AUAUUUUGUGUUUCUAGAUGAAUAAUCGAGGAG-GGGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAACCCUCCAUUUUGCUUACUUUUCAUUACACCAA .......((((.....(((((((((.(((((((-((.......((((((((((((......))))))))))))))))))...))).)))...))))))))))... ( -23.51) >consensus AUAUU_UGUGUUACUGCAC__ACAUCGAAGAGG_GAGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUUACUUUUCACUAUACGAA .......((((..............(((((...((((.....(((((((((((((......))))))))))))).)))).))))).............))))... (-13.15 = -13.11 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:06 2006