Locus 3034

Sequence ID 3L_DroMel_CAF1
Location 8,706,322 – 8,706,432
Length 110
Max. P 0.905229
window4743

overview

Window 3

Location 8,706,322 – 8,706,432
Length 110
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 77.69
Mean single sequence MFE -27.48
Consensus MFE -11.16
Energy contribution -13.44
Covariance contribution 2.28
Combinations/Pair 1.21
Mean z-score -2.23
Structure conservation index 0.41
SVM decision value 1.04
SVM RNA-class probability 0.905229
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8706322 110 - 23771897
AAGAUCCGCCGUAUUGGCUCUUCUUGAAGACUGAAAGGUAGAGAAGAUACAAAAGAAGGUAAGUCUGGGUGGCAAA---GCGGUGCUAUGAAGUCAAUCCAAAAUCAUAGGAU
...(((((((...(((..(((((((....(((....))).)))))))..))).....)))..(.((..((((((..---....))))))..)).)..............)))) ( -28.30)
>DroSec_CAF1 11890 110 - 1
AAGAUCCGCCGUAUUGGCUCUUCUUGAAGACUGAAAGGUAGAGAAGAUACAAAAGAAAGUAAGUAUGUGUGGCAAA---GCGGUGCUAUGGAGUCAAUCCAUAGUCAUAGGAU
...(((((((((.(((.((((((((....(((....))).)))))))(((........))).........).))).---)))))((((((((.....))))))))....)))) ( -35.70)
>DroSim_CAF1 12710 109 - 1
AAGAUCCGCCGUAUUGGCUCUUCUUGAAGACUGAAAGGUAGAGAAGAUACAA-ACAAAGUAAGUAUGUGUGGCAAA---GCGGUGCUAUGGAGUCAAUCCAUAGUCAUAGGAU
...(((((((((.(((.(.((((((....(((....))).))))))(((((.-((.......)).)))))).))).---)))))((((((((.....))))))))....)))) ( -37.70)
>DroEre_CAF1 11792 95 - 1
AAGAUCCGCCGUAAUGGCUCUUCUUGAAGACUGAAAG-UAGAG---AUAGAAAAGAACGUAAGUACGGGUGGCAUAAGA---GUGAUGUAUUG-----------UCAUGUGAA
.....(((((.......((((.(((.........)))-.))))---........(.((....)).).))))).......---(((((.....)-----------))))..... ( -17.40)
>DroYak_CAF1 11955 98 - 1
AAGAUCCGCCGUAUGAGCUCUUCGAGAAGACUGAAAGUUAGAG---AUAGAAAAGAAAAUAAGUACG-GUGGCAUUACAGCAGUGCUCUGAAG-----------UUAUAGGAA
....((((((((((...((.(((.....(((.....)))....---...))).)).......)))))-))((((((.....))))))......-----------.....))). ( -18.30)
>consensus
AAGAUCCGCCGUAUUGGCUCUUCUUGAAGACUGAAAGGUAGAGAAGAUACAAAAGAAAGUAAGUAUGGGUGGCAAA___GCGGUGCUAUGAAGUCAAUCCA_A_UCAUAGGAU
.....((((((((((.(((((((((....(((....))).)))))))...........)).)))))).)))).............((((((.............))))))... (-11.16 = -13.44 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:03 2006