Locus 3032

Sequence ID 3L_DroMel_CAF1
Location 8,705,501 – 8,705,592
Length 91
Max. P 0.997529
window4741

overview

Window 1

Location 8,705,501 – 8,705,592
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 98.68
Mean single sequence MFE -41.42
Consensus MFE -41.44
Energy contribution -41.28
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -2.02
Structure conservation index 1.00
SVM decision value 2.88
SVM RNA-class probability 0.997529
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8705501 91 - 23771897
CGCUUCUGGUGUGUGCGGUAUCGGGGCUUUGGCCGUACUCCACGGCGAUCCGGCCCAUGCACGCAUCGGAAAUCGGGCCAACUGGGGUUAA
((.((((((((((((((......(((((.(.(((((.....))))).)...))))).))))))))))))))..))((((......)))).. ( -40.90)
>DroSec_CAF1 11073 91 - 1
CGCUUCUGGUGUGUGCGGUAUCGGGGCUUUGGCCGUACUCCACGGCGAUCCGGCCCAUGCACGCAUCGGAAAUCGGGCCAACUGGGGUUAA
((.((((((((((((((......(((((.(.(((((.....))))).)...))))).))))))))))))))..))((((......)))).. ( -40.90)
>DroSim_CAF1 11890 91 - 1
CGCUUCUGGUGUGUGCGGUAUCGGGGCUUUGGCCGUACUCCACGGCGAUCCGGCCCAUGCACGCAUCGGAAAUCGGGCCAACUGGGGUUAA
((.((((((((((((((......(((((.(.(((((.....))))).)...))))).))))))))))))))..))((((......)))).. ( -40.90)
>DroEre_CAF1 10948 91 - 1
CGCUUCUGGUGUGUGCGGUAUCGGGGCUUUGGCCGUACUCCACGGCGAUCCGGCCCAUGCACGCAUCGGAAAUCGGGCCAACAGGGGCUUA
...((((((((((((((......(((((.(.(((((.....))))).)...))))).))))))))))))))...(((((......))))). ( -43.50)
>DroYak_CAF1 11132 91 - 1
CGCUUCUGGUGUGUGCGGUAUCGGGGCUUUGGCCGUACUCCACGGCGAUCCGGCCCAUGCACGCAUCGGAAAUCGGGCCAACUGGGGUUAA
((.((((((((((((((......(((((.(.(((((.....))))).)...))))).))))))))))))))..))((((......)))).. ( -40.90)
>consensus
CGCUUCUGGUGUGUGCGGUAUCGGGGCUUUGGCCGUACUCCACGGCGAUCCGGCCCAUGCACGCAUCGGAAAUCGGGCCAACUGGGGUUAA
((.((((((((((((((......(((((.(.(((((.....))))).)...))))).))))))))))))))..))((((......)))).. (-41.44 = -41.28 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:01 2006