| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,693,459 – 8,693,567 |
| Length | 108 |
| Max. P | 0.697771 |
| Location | 8,693,459 – 8,693,567 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 85.12 |
| Mean single sequence MFE | -33.72 |
| Consensus MFE | -27.24 |
| Energy contribution | -27.80 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8693459 108 + 23771897 UUGAUCCUGCUUGUUGCAAAGGACUAGCACAGAGCAGGGUUGUGUGGCACUGUCUGAUAGGAUGGUGUACAGAAAGCUGGAAAACCAAUAAGAUUAGCACCGCAUCUA ..((((((((((..(((.........)))..))))))))))((((((...((.(((((..(.((((...(((....)))....)))).)...)))))))))))))... ( -34.20) >DroSec_CAF1 247 108 + 1 UUGAUCCUGCUUGUUGCAAAGCACUAGCACAGAGCAGGGUUGUGUGGCACUGUCUGAUAGGAUGGUGUACAGAAAGCUGGAAAACCAAUGAGAUUAGCACCGUAUCUA ..((((((((((..(((.........)))..))))))))))((((.(((((((((....))))))))).(((....))).................))))........ ( -32.60) >DroSim_CAF1 235 108 + 1 UUGAUCCUGCUUGUUGCAAAGGACUAGCACAGAGCAGGGUUGUGUGGCACUGUCUGAUAGGAUGGUGUACAGAAAGCUGGAAAACCAAUGAGAUUAGCACCGCAUUUA ..((((((((((..(((.........)))..))))))))))((((((..((((((.((....((((...(((....)))....)))))).))).)))..))))))... ( -35.00) >DroEre_CAF1 247 108 + 1 UUGAUCCUGCUUGUUGCAAAGGACUAGCACAGAGCAGGGUUGUGUGGCACUGUCUGCUAGGAUGGUGUAGAGGAAGCUGGAAAACCAAUGGGAUUAGCACGGGAUCUA ..(((((((((.(((.((..((.((((((((.(((...))).))).(((((((((....))))))))).......)))))....))..)).))).)))..)))))).. ( -35.60) >DroYak_CAF1 235 108 + 1 UUGAUCCUGCUUGUUGCAAAGGACUAGCACAGAGCAGGGUUGUGUGGCACUGUCUGACAAGAUGGUGUACAGAAAACUGGAAAAGCGACGAGAUUAGCAUGGGAACUG ....((((.((((((((...(........)....(((..((.((((.((((((((....)))))))))))).))..))).....))))))))........)))).... ( -32.40) >DroMoj_CAF1 54312 107 + 1 CAGAUCCUGCUUGUUGCACAGUAUCAGCACUGAGCAUGGCUGAGUAGCACUGUCUGCCAGAAUGGUGUACAAGGUGCUGUAAGAGCAGU-UGAUUAGGAGAAAGUGAA ..((((((((((.....((((((((.(((((.(((...))).))).))..(((..(((.....)))..))).))))))))..)))))).-.))))............. ( -32.50) >consensus UUGAUCCUGCUUGUUGCAAAGGACUAGCACAGAGCAGGGUUGUGUGGCACUGUCUGAUAGGAUGGUGUACAGAAAGCUGGAAAACCAAUGAGAUUAGCACCGCAUCUA ..((((((((((..(((.........)))..))))))))))((((.(((((((((....))))))))).........(((....))).........))))........ (-27.24 = -27.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:55 2006