Locus 3027

Sequence ID 3L_DroMel_CAF1
Location 8,691,591 – 8,691,706
Length 115
Max. P 0.866083
window4731

overview

Window 1

Location 8,691,591 – 8,691,706
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.26
Mean single sequence MFE -26.80
Consensus MFE -10.30
Energy contribution -12.10
Covariance contribution 1.80
Combinations/Pair 1.22
Mean z-score -2.07
Structure conservation index 0.38
SVM decision value 0.85
SVM RNA-class probability 0.866083
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8691591 115 - 23771897
UUCUUUAAUGUGAAGAACCUACAAAC----AUGGUUACAUAGU-ACGGGUUUCACAGAAUUGUUGUGAAUGACCAAAGUGAGAUAUGUAAAUCAUUUACGAGGCAUUUACAAAUGCAAAU
........((((((...(((......----(((((((((((.(-((.((((((((((.....))))))..))))...)))...))))).)))))).....)))..))))))......... ( -27.30)
>DroSec_CAF1 79417 113 - 1
UUCUUUGAUGUGAAGAACGUACAAAC----CCG--UACAUAGU-ACGGGUUUCACAGAAUUAUUGUGAAUGACCAAAGUGAGAUAUGUAAAUCAUUUACGAUGCAUUUACAAAUGCAAAU
((((.((((((.....))))..((((----(((--(((...))-)))))))))).))))..(((((((((((.....(((...))).....)))))))))))(((((....))))).... ( -29.30)
>DroSim_CAF1 79923 113 - 1
UUAUUUGAUGUGAAGAGCGUACAAAC----CCG--UACAUAGU-ACGGGCUUCACAGAAUUAUUGUGAAUGACCAAAGCGAGAUAUGUAAAUCAUUGACGAGGCAUUUACAAAUGCAAAU
..(((((.(((((((..........(----(((--(((...))-))))))))))))......(((((((((.((....((((((......))).)))....)))))))))))...))))) ( -31.40)
>DroEre_CAF1 84017 116 - 1
UUCUUUCAUGUGUAGAACGUACAUAUGAACGUGUAUAUGAAGCAUAGGGUUCCACAGAAAUGUUGUGAAUGGGCAGAAUGGAAU----AACUCACUUACGAGUCAUUUACAAAUGUAAAU
....((((((((((.....))))))))))..((((.((((..(.((((((((((((....))((((......))))..))))))----......)))).)..)))).))))......... ( -25.10)
>DroYak_CAF1 82135 110 - 1
UUCUUUCAUACAUACAUCAUACAUAC------AUAUAUGAAGCGAUGGGUUUCACAGAAUUAUUGUGAAUGAGCAGAGUGCGAU----AACUCAUUUACGAGUCAUUUACGUUUGAUAAU
...............((((.((....------.....((((((.....))))))..((....(((((((((((...........----..))))))))))).))......)).))))... ( -20.92)
>consensus
UUCUUUCAUGUGAAGAACGUACAAAC____CCG__UACAUAGU_ACGGGUUUCACAGAAUUAUUGUGAAUGACCAAAGUGAGAUAUGUAAAUCAUUUACGAGGCAUUUACAAAUGCAAAU
........(((((((..(((........................)))..)))))))......(((((((((.((.((((((..........))))))....)))))))))))........ (-10.30 = -12.10 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:52 2006