Locus 3025

Sequence ID 3L_DroMel_CAF1
Location 8,688,651 – 8,688,745
Length 94
Max. P 0.613227
window4728

overview

Window 8

Location 8,688,651 – 8,688,745
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 90.46
Mean single sequence MFE -27.33
Consensus MFE -23.58
Energy contribution -23.83
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -1.52
Structure conservation index 0.86
SVM decision value 0.16
SVM RNA-class probability 0.613227
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8688651 94 + 23771897
CGAGUCUGUUCUUCGCGUUUAAGUGAAUUUGUUGCACAUUUGCAUUUAGAUGACGGAGGCCGCACUUGUUUAUGGCCAAAACAA---GACUGGUAGA
(.((((((((.((((((((((((((....((.....))....)))))))))).))))(((((..........)))))..))).)---)))).).... ( -27.40)
>DroSec_CAF1 76447 94 + 1
CGAGUCUGUCCUUCGCGUUUAAGUGAAUUUGUUGCACAUUUGCAUUUAGAUGACGGAGGCCGCACUUGUUUAUGGCCAAAACCC---GACUGGUAGA
(((((.((.((((((((((((((((....((.....))....)))))))))).)))))).)).)))))......((((......---...))))... ( -27.90)
>DroSim_CAF1 76927 94 + 1
CGAGUCUGUCCUUCGCGUUUAAGUGAAUUUGUUGCACAUUUGCAUUUAGAUGACGGAGGCCGCACUUGUUUAUGGCCAAAACUC---GACUGGUAGA
(((((.((.((((((((((((((((....((.....))....)))))))))).)))))).)).)))))......((((......---...))))... ( -27.90)
>DroEre_CAF1 80778 94 + 1
AAAGUCUGUCCUUCGCGUUUAAGUGAAUUUGUUGCGCAUUUGCAUUUAGAUGACGGAGGCCGCACUUGUUUAUGGCCAAUACCC---GACUGGUAGA
.((((.((.((((((((((((((((....((.....))....)))))))))).)))))).)).)))).......((((......---...))))... ( -26.30)
>DroYak_CAF1 79150 97 + 1
AAAGUCUGUCCUUCGCGUUUAAGUGAAUUUGUUGCGCAUUUGCAUUUAGAUGACGGAGGCCGCACUUGUUUAUGGCCAAAACCAAAAGACUGGUAGA
..((((((.((((((((((((((((....((.....))....)))))))))).)))))).)...........(((......)))..)))))...... ( -26.90)
>DroAna_CAF1 73591 93 + 1
GCAGCCUGUCCUUCGCGUCUAAGUGAAUUUGUUGCACAUUUGCAUUUAGAUGACGAAGGCCGCACUUGUUUAUUUCCA-CACUU---GCCUCACGGA
.....((((((((((((((((((((....((.....))....)))))))))).))))))..(((..(((........)-))..)---))...)))). ( -27.60)
>consensus
CGAGUCUGUCCUUCGCGUUUAAGUGAAUUUGUUGCACAUUUGCAUUUAGAUGACGGAGGCCGCACUUGUUUAUGGCCAAAACCC___GACUGGUAGA
.((((.((.((((((((((((((((....((.....))....)))))))))).)))))).)).)))).......((((............))))... (-23.58 = -23.83 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:49 2006