Locus 3024

Sequence ID 3L_DroMel_CAF1
Location 8,688,298 – 8,688,396
Length 98
Max. P 0.723100
window4727

overview

Window 7

Location 8,688,298 – 8,688,396
Length 98
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 56.43
Mean single sequence MFE -20.97
Consensus MFE -9.32
Energy contribution -11.10
Covariance contribution 1.78
Combinations/Pair 1.15
Mean z-score -1.58
Structure conservation index 0.44
SVM decision value 0.40
SVM RNA-class probability 0.723100
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8688298 98 - 23771897
GUCACAUUAAUUACAAUGUAUACUAUCUAAAAA-----AAAAGUGUGUAAGAGUAUGGAACAAUGGCGAAUAUUUAAUAUAGCAUACUUUUAGACACCUUUGU----------------
...(((((......)))))..............-----(((.((((.((((((((((.........................)))))))))).)))).)))..---------------- ( -16.61)
>DroEre_CAF1 80435 101 - 1
-------UAAUUACACAGCUAAGUAUCUUCGACAUGUAUGCAACGUGUAUGAGGAUACAACAAUGUAGGUUGCUUUAUAUAGAAUACUUUUAGACAGCUUUACUGAUG-----------
-------........(((....(((((((((((((((.....)))))).)))))))))........((((((.((((...((....))..))))))))))..)))...----------- ( -23.80)
>DroYak_CAF1 78793 111 - 1
UGUACAGUAUCUACACAGGGUAGUAUCUA--------ACUAAAUGCUUAGAAGUAUGCAACAAUGUAGGUCAUUUUAUAUGGCAUACUUUUAGACACCUUCAUAAUUGACUCAAAAACU
.....(((........(((((.((((...--------.....))))((((((((((((....(((((((....))))))).))))))))))))..)))))........)))........ ( -22.49)
>consensus
___ACA_UAAUUACACAGCAUAGUAUCUA__A_____AAAAAAUGUGUAAGAGUAUGCAACAAUGUAGGUUAUUUUAUAUAGCAUACUUUUAGACACCUUUAU___UG___________
............................................((.(((((((((((....(((((((....))))))).))))))))))).))........................ ( -9.32 = -11.10 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:48 2006