| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 867,861 – 867,956 |
| Length | 95 |
| Max. P | 0.936765 |
| Location | 867,861 – 867,956 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 89.97 |
| Mean single sequence MFE | -26.86 |
| Consensus MFE | -20.64 |
| Energy contribution | -21.36 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.936765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 867861 95 + 23771897 CCUGGCCUCAGUAUCUGUCAGAUACAUUGCCUAUCUGGCAGCUACAGUCGAACUUGGCCCAUAAUCAAUCCGAAUUGUGGG-AAAUCGUCAUAUCA ..((((....(((.((((((((((.......)))))))))).)))............((((((((........))))))))-.....))))..... ( -27.60) >DroSec_CAF1 10820 95 + 1 CCUUGCCUCAGUAUCUGUCAGAUACAUUGCCUAUCUGGCAGCUACAGUCGAACUUGGUCCAUAAUCAAUCCGAAUUGUGGG-AAAUUGUCAUAUCA ..........(((.((((((((((.......)))))))))).)))....((......((((((((........))))))))-......))...... ( -24.20) >DroSim_CAF1 5851 95 + 1 CCUGGCCUCAGUAUCUGUCAGAUACAUUGCCUAUCUGGCAGCUACAGUCGAACCUGGCCCAUAAUCAAUCCGAAUUGUGGG-AAAUUGUCAUAUCA ..((((....(((.((((((((((.......)))))))))).)))............((((((((........))))))))-.....))))..... ( -27.30) >DroEre_CAF1 10839 95 + 1 CCUGGCCUCAGUAUCUGUCAGAUACAUUGCCUAUCUGGCAGCUACAGUCGAACUUGGGCCAUAAUCAAUCCGACUCG-GGAAAAGCAUUCAAUUAA ..(((((.(((((.((((((((((.......)))))))))).)))((.....))))))))).......(((......-)))............... ( -26.40) >DroYak_CAF1 10872 96 + 1 CCUGGCCUCAGUAUCUGUCAGAUACAUUGCCUAUCUGGCAGCUACAGUCGAACUUGGGCCAUAAUCAAUCCGACUUGUGGACAAGCAUUCGCUUAG ..........(((.((((((((((.......)))))))))).)))((.((((((((..((((((((.....)).)))))).))))..))))))... ( -28.80) >consensus CCUGGCCUCAGUAUCUGUCAGAUACAUUGCCUAUCUGGCAGCUACAGUCGAACUUGGCCCAUAAUCAAUCCGAAUUGUGGG_AAAUAGUCAUAUCA ..........(((.((((((((((.......)))))))))).)))....((......(((((((((.....)).))))))).......))...... (-20.64 = -21.36 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:43 2006