Locus 3019

Sequence ID 3L_DroMel_CAF1
Location 8,675,602 – 8,675,710
Length 108
Max. P 0.538305
window4709

overview

Window 9

Location 8,675,602 – 8,675,710
Length 108
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 80.93
Mean single sequence MFE -36.97
Consensus MFE -20.17
Energy contribution -20.32
Covariance contribution 0.15
Combinations/Pair 1.14
Mean z-score -2.01
Structure conservation index 0.55
SVM decision value 0.01
SVM RNA-class probability 0.538305
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8675602 108 - 23771897
GUUUUGACCACUGUGACAUCCACCGCCAUUGCUGCCAUCCAGAGGGCCUGGUCCUGGUCCUUUGUGUUGA------UCGC--AG---ACCGGUGGAGAAAAUUGUUCAAUUACACAGAG
..........(((((...(((((((......((((.((((((((((((.......)))))))))....))------).))--))---..)))))))(((.....))).....))))).. ( -39.30)
>DroSec_CAF1 63700 108 - 1
GUUUUGACCACUGUGACAUCCACCGCCAUUGCUGCCGUCCAGAGGGCCUGGUCCUUGUCCUUUGUGUGGC------UCGC--AG---ACCGGUGGAGAAAAUUGUUCAAUUACACAGAG
..........(((((...(((((((...((((.((((..((((((((.........))))))))..))))------..))--))---..)))))))(((.....))).....))))).. ( -41.10)
>DroSim_CAF1 64076 108 - 1
GUUUUGACCACUGUGACAUCCACCGCCAUUGCCACCGUCCAGAGGGCCUGGUCCUGGUCCUUUGUGUGGC------UCGC--AG---ACCGGUGGAGAAAAUUGUUCAAUUACACAGAG
..........(((((...(((((((...((((..(((..(((((((((.......)))))))))..))).------..))--))---..)))))))(((.....))).....))))).. ( -42.10)
>DroEre_CAF1 65102 104 - 1
----AGACCACUGUGACAUCCACCGCCAUUGCUGCACUCCAGAGGGUCUGGU------CCUUUGUGUGGAUGUGGCUCGC--AG---ACCGGUGGAGAAAAUUGUUCAAUUACACAGGG
----...((.(((((...(((((((((((..(..(((.((((.....)))).------.....)))..)..)))))..(.--..---..)))))))(((.....))).....))))))) ( -36.50)
>DroYak_CAF1 65947 105 - 1
GUUUGGACCACUGUGACAUCCACCGCCAUUGCUGCCGUCCAGAGGGCCUGGU------CCUUUGUGUGGA------UCGC--AGACGACCGGUGGAGAAAAUUGUUCAAUUACACAGAG
..........(((((...(((((((...(((((((.(((((((((((...))------))))....))))------).))--)).))).)))))))(((.....))).....))))).. ( -38.30)
>DroAna_CAF1 60638 93 - 1
UUUUAAACCACUGUAUCUUGCACCGCCAUUGCAGCAAUCUGG-----------------CAAUGUCUGGA------UCCCCGAG---ACCGGUGCAGAAAAUUGUUCAAUUACACAGAG
..........((((.(((.(((((((((...........)))-----------------)...((((((.------...)).))---)).)))))))).....((......)))))).. ( -24.50)
>consensus
GUUUUGACCACUGUGACAUCCACCGCCAUUGCUGCCGUCCAGAGGGCCUGGU______CCUUUGUGUGGA______UCGC__AG___ACCGGUGGAGAAAAUUGUUCAAUUACACAGAG
..........(((((...((((((((....)).......((((((.............))))))..........................))))))(((.....))).....))))).. (-20.17 = -20.32 +   0.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:31 2006