| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,667,799 – 8,667,890 |
| Length | 91 |
| Max. P | 0.798824 |
| Location | 8,667,799 – 8,667,890 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.55 |
| Mean single sequence MFE | -44.06 |
| Consensus MFE | -21.12 |
| Energy contribution | -21.68 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.798824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8667799 91 + 23771897 AUGCCGUUGGAGACGCCAAA-UGGUGGCU---ACGCUCG----------------ACAGGG-----GAGGGUGGGGGGAUAGGGGGCCA-CAGACGGGCCCCACUCUAAGCCACUCU ...((.(((..((((((...-.))))((.---..)))).----------------.))).)-----)(((((((..(((...((((((.-......))))))..)))...))))))) ( -38.00) >DroSec_CAF1 55677 94 + 1 AUGCCGUUGGAGACGCCAAGUUGGUGGCUGCUACGUUUG----------------GCAGGG----GGGGAGU--GGAACUAGGGGGCCU-CAGACGGGCCCCACUCUAAGCCACUCU .(.((........((((.....)))).((((((....))----------------))))))----.)(((((--((....(((((((((-.....))))))).)).....))))))) ( -40.40) >DroSim_CAF1 56015 93 + 1 AUGCCGUUGGAGACGCCAAGUUGGUGGCUCCAACGUUUG----------------ACAGGG-----GGGAGU--GGGGCUAGGGGGCCU-CAGACGGGCCCCACUCUAAGCCACUCU ....((((((((.((((.....)))).))))))))....----------------..((((-----.((..(--((((....(((((((-.....))))))).)))))..)).)))) ( -45.90) >DroEre_CAF1 57001 111 + 1 CUGCCGUUGGGGACUCCAAG-UGGCGGCU---AUGUUCGCUUCGGUGGUUUGGCGACAGCGGAGUGGGGAGU--GGGGCAAGUGGGGCAGCAGACGGGCCCCACUCUAAGCCACUCU .(((((((((.....)))).-)))))(((---(...((((....))))..))))......((((((((((((--(((((..((..(....)..))..))))))))))...))))))) ( -52.70) >DroYak_CAF1 57455 103 + 1 AUGCCGUUGGAGACUCCAAG-UGCUGGCU---AUGCUCGACUCGGUGGAUCACCGACAG-------GGGAGU--GGGGCAAGUGUUCCA-CAGACGGGCCCCACUCUAAGCCACUCU ..((..((((.....)))).-.))(((((---...(((...((((((...))))))..)-------))((((--(((((..((.(....-.).))..)))))))))..))))).... ( -43.30) >consensus AUGCCGUUGGAGACGCCAAG_UGGUGGCU___ACGUUCG________________ACAGGG_____GGGAGU__GGGGCUAGGGGGCCA_CAGACGGGCCCCACUCUAAGCCACUCU ..((((((((.....)))).....)))).......................................(((((..((((....((((((........)))))).)))).....))))) (-21.12 = -21.68 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:26 2006