Locus 3015

Sequence ID 3L_DroMel_CAF1
Location 8,663,734 – 8,663,825
Length 91
Max. P 0.909123
window4702

overview

Window 2

Location 8,663,734 – 8,663,825
Length 91
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 82.38
Mean single sequence MFE -22.47
Consensus MFE -12.06
Energy contribution -12.66
Covariance contribution 0.60
Combinations/Pair 1.24
Mean z-score -2.71
Structure conservation index 0.54
SVM decision value 1.06
SVM RNA-class probability 0.909123
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8663734 91 + 23771897
AUAUGGUUCGGCCUCACUGUACAGUAGGGCUACUGUAUAAUUCCCGGCUGCGAAAAAAAAAACAACGAAUGACAGAGAAUAAACAA-AAUAU
.....((((((((..(((....)))..)))).((((...((((.......................)))).)))).))))......-..... ( -16.50)
>DroSec_CAF1 51619 89 + 1
AUUUGGUUCGGCCUUACUGUACGGUAGGGCUACUGUAUAAUUCUCGGCUGCGAAAA--AAAACAACGAAUAACAGAGAAUAAACAA-AAUAU
.((((....(((((((((....)))))))))........((((((.....((....--.......)).......))))))...)))-).... ( -19.70)
>DroSim_CAF1 52013 90 + 1
AUUUGGUUCGGCCUUACUGUACGGUAGGGCUACUGUAUAAUUCCCGGCUGCGAAAA-AAAAACAACGAAUAACAGAGAAUAAACAA-AAUAU
.(((((((((((((((((....))))))))).((((...((((.............-.........)))).)))).))))...)))-).... ( -17.85)
>DroYak_CAF1 53223 85 + 1
GUGUG-----GCCUUACUGUACGGUAGGGCUACUGUAUAAUUCCCGGCUGUGAAAA-AAAAACAACGAAUAACAGAGAAUAAACAA-AAUAU
..(((-----((((((((....)))))))))))(((...((((....((((.....-..............)))).))))..))).-..... ( -20.91)
>DroAna_CAF1 49880 83 + 1
-UAUGGCUUGGCCU--CCGUGUGGCAGGGCUACUGUAUAGUGCCCUGCCGCAAAAA-AG---CCAC--ACAGCCGAAAAUAAACAAAAAUAU
-..(((((((((..--...(((((((((((.(((....))))))))))))))....-.)---))).--..)))))................. ( -37.40)
>consensus
AUAUGGUUCGGCCUUACUGUACGGUAGGGCUACUGUAUAAUUCCCGGCUGCGAAAA_AAAAACAACGAAUAACAGAGAAUAAACAA_AAUAU
.........(((((((((....))))))))).((((...((((.......................)))).))))................. (-12.06 = -12.66 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:25 2006