| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,662,629 – 8,662,720 |
| Length | 91 |
| Max. P | 0.647837 |
| Location | 8,662,629 – 8,662,720 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -16.67 |
| Energy contribution | -18.12 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8662629 91 + 23771897 AAAA------------------AAAUGGAAACAACAACAA---GGCAGUCAAACAAAGCUGUUUCGCUUUUGAAUUUCUCGAAUGUUGAAGCUGCAAUCUGGCCCCCGCCCA ....------------------...((....)).......---.(((((..((((((((......))))((((.....)))).))))...))))).....(((....))).. ( -18.50) >DroSim_CAF1 50945 101 + 1 ---------UUAUAAAGCGGCGAAAUGGAAACAACAACAACACGACAGUCAAACAAAGCUGUUUCGCUUUUGAAUUU--CGAAUGUUGAAGCUGCAAUCUGGCCCCCGCCCA ---------.......(((((....((....)).(((((...(((...(((((...(((......))))))))...)--))..)))))..))))).....(((....))).. ( -26.80) >DroYak_CAF1 52076 110 + 1 AAAUAAAUUGUAUAAAGCGGCGAAAUGGAAACAACAACACGGCGGCAGUCAAACAAAGCUGUUUCGCUUUUCAGUUU--CGAAUGUUGAAGCUGCAAUCUGGCCCCCGCCCA ................(.((((...((....)).......((.((((((.(((((....))))).)))...((((((--(((...))))))))).......)))))))))). ( -28.90) >consensus AAA_______UAUAAAGCGGCGAAAUGGAAACAACAACAA__CGGCAGUCAAACAAAGCUGUUUCGCUUUUGAAUUU__CGAAUGUUGAAGCUGCAAUCUGGCCCCCGCCCA ................(((((....((....)).(((((.....(((((........)))))((((.............)))))))))..))))).....(((....))).. (-16.67 = -18.12 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:24 2006