Locus 3012

Sequence ID 3L_DroMel_CAF1
Location 8,661,843 – 8,661,947
Length 104
Max. P 0.666543
window4699

overview

Window 9

Location 8,661,843 – 8,661,947
Length 104
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 81.09
Mean single sequence MFE -25.41
Consensus MFE -14.74
Energy contribution -14.87
Covariance contribution 0.13
Combinations/Pair 1.11
Mean z-score -2.06
Structure conservation index 0.58
SVM decision value 0.28
SVM RNA-class probability 0.666543
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8661843 104 - 23771897
CAACCUACUUCUUGGCCACAAUGCAUG--AUGCACAAUGCUACCUGCGGCUUACUGGC--------CAACAUUGCCUAAUCCUGGCCAAAAAAAAAAAAAAAAAAGACGCCCAA
...........(((((((....(((..--..((.....))....)))((((....)))--------)...............)))))))......................... ( -21.50)
>DroSec_CAF1 49734 98 - 1
CAACCUACGUCUUGGCCGCAAUGCAUGAGAUGCACAAUGCUACCUGCGGCUUACUGGC--------CACCAUUGCCUAAUCCUGGCCAAAA--------AAAUAAGGCGCCCAA
.......(((((((((((((..((((..........))))....))))))....((((--------((..(((....)))..))))))...--------...)))))))..... ( -30.30)
>DroSim_CAF1 50157 100 - 1
CAACCUGCUUCUUGGCCACAAUGCAUGAGAUGCACAAUGCUACCUGCGGCUUACUGGC--------CACCAUUGCCUAAUCCUGGCCAAAAAA------AAAUAAGGCGCCCAA
...(((.....(((((((...(((((...)))))((((((.....))((((....)))--------)...))))........)))))))....------.....)))....... ( -22.94)
>DroYak_CAF1 51384 99 - 1
CAACUCACUUCUUGGCCACAAUGCAUGAAAG-----GGCCUACCUGCGGCUUACUGGCUUACUGGCCAGCAUUGCCUAAUCCUGGCUAAAA----------AAAAGGCGCCCAA
........(((...((......))..))).(-----(((........(((...((((((....))))))....)))........(((....----------....))))))).. ( -26.90)
>consensus
CAACCUACUUCUUGGCCACAAUGCAUGAGAUGCACAAUGCUACCUGCGGCUUACUGGC________CACCAUUGCCUAAUCCUGGCCAAAA________AAAAAAGGCGCCCAA
...........(((((((....(((.(....((.....))..).)))(((....((.............))..)))......)))))))......................... (-14.74 = -14.87 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:22 2006