Locus 3011

Sequence ID 3L_DroMel_CAF1
Location 8,659,848 – 8,659,964
Length 116
Max. P 0.566417
window4698

overview

Window 8

Location 8,659,848 – 8,659,964
Length 116
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 85.96
Mean single sequence MFE -35.64
Consensus MFE -22.72
Energy contribution -23.72
Covariance contribution 1.00
Combinations/Pair 1.15
Mean z-score -2.05
Structure conservation index 0.64
SVM decision value 0.07
SVM RNA-class probability 0.566417
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8659848 116 + 23771897
UGCAAUCAAUAAUUAGUUUUGGGAAACUAAACUUCCCCAGACCGGGGAAAUCCGCCACUUAUUUUCGGGGA--AAACAUCCGCUUUGAAGCGGGCCGCCCCAAA-AAUAGUCGCACUUA
.................(((((....))))).((((((.....))))))....((.(((.(((((.((((.--.....((((((....))))))...)))).))-)))))).))..... ( -37.00)
>DroSec_CAF1 47768 113 + 1
AGCAAUCAAUAAUAUGUUUUGGGAAAU---GCCAGCCCAGACCGGGGAAAUCCGCCAGUUAUUUUGGUGGG--AAACAUCCGCUUUGAAGCGGGCCGCCCCAAA-AAAAGGCGCACUUA
.((............(.((((((....---.....)))))).)((((...((((((((.....))))))))--.....((((((....))))))...))))...-.......))..... ( -35.90)
>DroSim_CAF1 48173 113 + 1
AGCAAUCAAUAAUAUGUUUUGGGAAAU---GCCAGCCCAGACCGGGGAAAUCCGGCAGUUAUUUUGGUGGG--AAACAUCCGCUUUGAAGCGGGCCGCCCCAAA-AAAAGGCGCACUUA
.((................(((.....---.)))(((..(.(((((....)))))).....((((..((((--.....((((((....))))))....))))..-)))))))))..... ( -32.20)
>DroEre_CAF1 49130 113 + 1
UGCCAUCAAUAACAAGUUUCGGGAAAC---GCCAACCCAAACCGGGCAAAUCCGCCAGCUAUUUUUGGGGG--AAACAUCCGCUUUGAAGCGGGCCGACCCCAA-AAUAGUCGCUCAUA
((((...........((((.(((....---.....)))))))..)))).....((..((((((((.((((.--.....((((((....))))))....))))))-)))))).))..... ( -32.12)
>DroYak_CAF1 49328 116 + 1
UGCAAUCAAUAACAUGUUGUGGGAAAC---GCCAGUCCAGACUGGGGAAAUCCGCCAGCUAUUUUGGGGGGGUAAACAUCCGCUUUGAAGCGGGCCGACCCCAAAAAUAGUCGCACUUA
(((...............(((((...(---.(((((....))))).)...)))))..((((((((...(((((.....((((((....))))))...))))).)))))))).))).... ( -41.00)
>consensus
UGCAAUCAAUAAUAUGUUUUGGGAAAC___GCCAGCCCAGACCGGGGAAAUCCGCCAGUUAUUUUGGGGGG__AAACAUCCGCUUUGAAGCGGGCCGCCCCAAA_AAUAGUCGCACUUA
.((............(.((((((............)))))).)((((...(((.((((.....)))).))).......((((((....))))))...))))...........))..... (-22.72 = -23.72 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:21 2006