| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 867,574 – 867,665 |
| Length | 91 |
| Max. P | 0.902602 |
| Location | 867,574 – 867,665 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 85.85 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -21.16 |
| Energy contribution | -21.80 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.902602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 867574 91 + 23771897 AAAAUUGCGCAUACGCCGUGUUGUGUAGUCAAUGCUUUUCUCGCUUUGUUUGGCUGCUAAGCGUUUUUUUUUUUUUACGCUGACAACGCUU ......(((....))).(((((((((((((((.((.......)).....))))))))..(((((............))))).))))))).. ( -25.00) >DroSec_CAF1 10541 87 + 1 AAAAUUGCGCAUACGCCGUGUUGUGCAGUCAAUGCUUUUCUCGCUUUGUUUGGCUGCUAAGCGUUUUA----UUAUACGCUGACAACGCUU ......(((....))).(((((((((((((((.((.......)).....))))))))..(((((....----....))))).))))))).. ( -28.10) >DroSim_CAF1 5557 86 + 1 AAAAUUGCGCAUACGCCGUGUUGUGCAGUCAAUGCUUUUCUCGCUUUGUUUGGCUGCUAAGCGUUUU-----UUUUACGCUGACAACGCUU ......(((....))).(((((((((((((((.((.......)).....))))))))..(((((...-----....))))).))))))).. ( -27.80) >DroEre_CAF1 10588 77 + 1 AAAAUUGCGCAUACGCCGUGUUGUGCAGUCAAUGCU---------UUGUUUGGCUGCUAAGCGUU-----UUUUUUACGCUGACAACGCUU ......(((....))).(((((((((((((((....---------....))))))))..(((((.-----......))))).))))))).. ( -27.70) >DroYak_CAF1 10589 91 + 1 AAAAUUGCGCAUACGCCGUGUUGUGCAGUCAAUGCUUUUCUCGCUUUGUUUUGCUGCUAAGCGUUUUCUUUUUUUUACGCUGACAACGCUU ......(((....))).(((((((((((((((.((.......)).)))....)))))..(((((............))))).))))))).. ( -23.60) >DroAna_CAF1 10463 83 + 1 AAAAUUGCGCAUACGACGUGU-GUGGCGGCGUGGCUGUGCUCGCUUUGUUUCCCAGCUAAGCGUUU-------UUUACGCUGACAACGCUG .......(((((((...))))-))).(((((((((((.((.......))....))))).(((((..-------...)))))....)))))) ( -25.20) >consensus AAAAUUGCGCAUACGCCGUGUUGUGCAGUCAAUGCUUUUCUCGCUUUGUUUGGCUGCUAAGCGUUUU_____UUUUACGCUGACAACGCUU ......(((....))).(((((((((((((((.((............))))))))))..(((((............))))).))))))).. (-21.16 = -21.80 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:42 2006