| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,653,852 – 8,653,963 |
| Length | 111 |
| Max. P | 0.627093 |
| Location | 8,653,852 – 8,653,963 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.78 |
| Mean single sequence MFE | -33.22 |
| Consensus MFE | -21.47 |
| Energy contribution | -22.67 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8653852 111 - 23771897 UUAGUUCCAGGGAAUUUCCAAAUGUAUCCGUAGCUAUCGGU--------CAUCCAUGAUCCAUGGCGAUAUCCGAUUUAGUUCCAACUAACGCGAACCGGAUCGACUUUCCUGCGGCUA- .((((..(((((((.........(((((....(((((.(((--------((....))))).)))))))))).(((((..(((((.......).))))..)))))..)))))))..))))- ( -33.40) >DroSec_CAF1 41775 111 - 1 AUAGUUCCAGGGAAUUUCCAAGCGCAUUUGUCGCUAUCGGU--------CAUUCAUGAUCCAUGGCGAUAUCCGAUUGAGUUCCAACUAACGCGAACCGGAUCGACUUUCCUGCGGCUA- .((((..(((((((..............(((((((((.(((--------((....))))).)))))))))..(((((..(((((.......).))))..)))))..)))))))..))))- ( -36.40) >DroSim_CAF1 42164 111 - 1 AUAGUUCCAGGGAAUUUCCAAGCGCAUUAGUCGCUAUCGGU--------CAUUCAUGAUCCAUGGCGAUAUCCGAUGGAGUUCCAACUAACGCGAACCGGAUCGACUUUCCUGCGGCUA- .((((..(((((((..(((...(((.(((((((((((.(((--------((....))))).))))))).......(((....))).)))).)))....))).....)))))))..))))- ( -38.20) >DroEre_CAF1 43204 119 - 1 UUAAUUCCAGGGAAUUUCCCAGUGUAUCCGUCGUUAUCAGCCAUUCAGCCAUUCAUGAUCCAUGGCGAUAUCCGAUUGAGUUCCAACUAACGCGCACCGGAUCGACUUUCCUGCGGCUA- ......((.(((((..((((.((((.((.((((.((((.((((((((........)))...)))))))))..)))).))(((......)))..)))).))...))..)))))..))...- ( -28.80) >DroYak_CAF1 43030 102 - 1 AUAAUUCCAGGGAAGUUC----------CAUCGUUAUCAGC--------CAUUCAUGAUCCAUGGCGAUAUCCGAUUGAGUUCCAACUAACGCGAUCCGGAUCGACUUUCCUGCGGCUAU .....((((((((((((.----------......((((.((--------(((.........)))))))))((((((((.(((......))).)))).))))..)))))))))).)).... ( -29.30) >consensus AUAGUUCCAGGGAAUUUCCAAGCGCAUCCGUCGCUAUCGGU________CAUUCAUGAUCCAUGGCGAUAUCCGAUUGAGUUCCAACUAACGCGAACCGGAUCGACUUUCCUGCGGCUA_ .((((..(((((((...............((((((((.((...................))))))))))...(((((..(((((.......).))))..)))))..)))))))..)))). (-21.47 = -22.67 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:18 2006