Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,651,564 – 8,651,684 |
Length | 120 |
Max. P | 0.514471 |
Location | 8,651,564 – 8,651,684 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.94 |
Mean single sequence MFE | -39.20 |
Consensus MFE | -32.28 |
Energy contribution | -32.83 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.83 |
Structure conservation index | 0.82 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8651564 120 + 23771897 CCAAAUUGGAAAAGGCCGACAUUCUGGAGAAGACAGUAAAGCAUCUGCAGGAGCUGCAGCGCCAGCAGGCAGCCAUGCAGCAGGCCGCCGAUCCCAAGAUUGUGAACAAAUUCAAGGCCG ((.....))....((((....(((((.(((.(.(......)).))).)))))(((((((((((....))).))..)))))).))))(((((((....)))).((((....)))).))).. ( -40.00) >DroPse_CAF1 42026 120 + 1 CCAAAUUGGAAAAGGCCGAUAUCCUGGAGAAGACAGUGAAGCAUCUGCAGGAGCUGCAGCGGCAGCAGGCAGCCAUGCAGCAGGCCGCCGAUCCCAAGAUAAUCAACAAAUUCAAGGCCG ....(((((....((((....(((((.(((.(.(......)).))).)))))((((((..(((........))).)))))).)))).)))))............................ ( -40.00) >DroSim_CAF1 39843 120 + 1 CCAAAUUGGAAAAAGCCGACAUUCUCGAGAAGACAGUGAAGCAUCUGCAGGAGCUGCAGCGCCAACAGGCAGCUAUGCAGCAGGCCGCCGAUCCCAAGAUUGUGAACAAAUUCAAGGCCG ((...((((......))))((((.((.....)).))))..((....)).)).(((((((((((....))).))..)))))).((((..(((((....)))))((((....)))).)))). ( -36.40) >DroEre_CAF1 40933 120 + 1 CCAAAUUGGAAAAGGCCGACAUUCUGGAGAAGACAGUGAAGCAUCUGCAGGAGCUGCAGCGCCAGCAGGCAGCCAUGCAGCAGGCCGCCGAUCCCAAGAUCGUGAACAAAUUCAAGGCCG ((.....))....((((....(((((.(((.(.(......)).))).)))))(((((((((((....))).))..)))))).))))(((((((....)))).((((....)))).))).. ( -42.60) >DroAna_CAF1 37563 120 + 1 CGAAAUUGGAAAAGGCCGACAUCCUGGAGAAGACAGUGAAGCAUCUGCAGGAACUGCAGCGUCAGCAGGCUGCCAUGCAACAGGCUGCCGAUCCCAAGAUUGUCAACAAAUUCAAGGCCG .............(((((((.(((((.......))).)).....((((((...)))))).))).((((.(((........))).))))(((((....))))).............)))). ( -35.50) >DroPer_CAF1 42655 120 + 1 CGAAAUUGGAAAAGGCCGAUAUCCUGGAGAAGACAGUGAAGCAUCUGCAGGAGCUGCAGCGGCAGCAGGCAGCCAUGCAGCAGGCCGCCGAUCCCAAGAUAAUCAACAAAUUCAAGGCCG .(..(((((....((((....(((((.(((.(.(......)).))).)))))((((((..(((........))).)))))).)))).)))))..)......................... ( -40.70) >consensus CCAAAUUGGAAAAGGCCGACAUCCUGGAGAAGACAGUGAAGCAUCUGCAGGAGCUGCAGCGCCAGCAGGCAGCCAUGCAGCAGGCCGCCGAUCCCAAGAUUGUCAACAAAUUCAAGGCCG ....(((((....((((....(((((.(((.(.(......)).))).)))))(((((((((((....))).))..)))))).)))).)))))............................ (-32.28 = -32.83 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:12 2006